RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 MPV17P39210 176 aa11.15□□□□□ -0.62
RTN3-212ENST00000543123 HTR5AP47898 357 aa11.15□□□□□ -0.62
RTN3-212ENST00000543123 GSK3BP49841 420 aa11.15□□□□□ -0.62
RTN3-212ENST00000543123 NUDT2P50583 147 aa11.15□□□□□ -0.62
RTN3-212ENST00000543123 AQP6Q13520 282 aa11.15□□□□□ -0.62
RTN3-212ENST00000543123 ENDOGQ14249 297 aaKnown RBP11.15□□□□□ -0.62
RTN3-212ENST00000543123 MTX3Q5HYI7 312 aa11.15□□□□□ -0.62
RTN3-212ENST00000543123 GPR139Q6DWJ6 353 aa11.15□□□□□ -0.62
RTN3-212ENST00000543123 ADCK1Q86TW2 530 aa11.15□□□□□ -0.62
RTN3-212ENST00000543123 CLDN22Q8N7P3 220 aa11.15□□□□□ -0.62
RTN3-212ENST00000543123 GTF3AQ92664 365 aaKnown RBP11.15□□□□□ -0.62
RTN3-212ENST00000543123 CMTM5Q96DZ9 223 aa11.15□□□□□ -0.62
RTN3-212ENST00000543123 NMNAT1Q9HAN9 279 aaPredicted RBP11.15□□□□□ -0.62
RTN3-212ENST00000543123 MED4Q9NPJ6 270 aa11.15□□□□□ -0.62
RTN3-212ENST00000543123 TBCCD1Q9NVR7 557 aa11.15□□□□□ -0.62
RTN3-212ENST00000543123 ENPP4Q9Y6X5 453 aa11.15□□□□□ -0.62
RTN3-212ENST00000543123 TEX13CA0A0J9YWL9 993 aa11.14□□□□□ -0.63
RTN3-212ENST00000543123 A0A1W2PRQ8 180 aa11.14□□□□□ -0.63
RTN3-212ENST00000543123 ZSCAN5BA6NJL1 495 aa11.14□□□□□ -0.63
RTN3-212ENST00000543123 H7C1C5 153 aa11.14□□□□□ -0.63
RTN3-212ENST00000543123 J3QW42 95 aa11.14□□□□□ -0.63
RTN3-212ENST00000543123 SURF4O15260 269 aa11.14□□□□□ -0.63
RTN3-212ENST00000543123 SGCEO43556 437 aa11.14□□□□□ -0.63
RTN3-212ENST00000543123 PLPP2O43688 288 aa11.14□□□□□ -0.63
RTN3-212ENST00000543123 DEAF1O75398 565 aaPredicted RBP11.14□□□□□ -0.63
RTN3-212ENST00000543123 UBOX5O94941 541 aa11.14□□□□□ -0.63
RTN3-212ENST00000543123 NDUFB2O95178 105 aa11.14□□□□□ -0.63
RTN3-212ENST00000543123 H1F0P07305 194 aaKnown RBP11.14□□□□□ -0.63
RTN3-212ENST00000543123 TNFRSF1AP19438 455 aa11.14□□□□□ -0.63
RTN3-212ENST00000543123 EPHA1P21709 976 aa11.14□□□□□ -0.63
RTN3-212ENST00000543123 SDHAP31040 664 aa11.14□□□□□ -0.63
RTN3-212ENST00000543123 LCN6P62502 163 aa11.14□□□□□ -0.63
RTN3-212ENST00000543123 KRR1Q13601 381 aaKnown RBP11.14□□□□□ -0.63
RTN3-212ENST00000543123 DGCR6Q14129 220 aa11.14□□□□□ -0.63
RTN3-212ENST00000543123 FGD3Q5JSP0 725 aa11.14□□□□□ -0.63
RTN3-212ENST00000543123 DCAF12L2Q5VW00 463 aa11.14□□□□□ -0.63
RTN3-212ENST00000543123 USP43Q70EL4 1123 aa11.14□□□□□ -0.63
RTN3-212ENST00000543123 ST7LQ8TDW4 575 aa11.14□□□□□ -0.63
RTN3-212ENST00000543123 G6PC2Q9NQR9 355 aa11.14□□□□□ -0.63
RTN3-212ENST00000543123 ATPIF1Q9UII2 106 aa11.14□□□□□ -0.63
RTN3-212ENST00000543123 SAMD4AQ9UPU9 718 aaKnown RBP11.14□□□□□ -0.63
RTN3-212ENST00000543123 ADAM18Q9Y3Q7 739 aa11.14□□□□□ -0.63
RTN3-212ENST00000543123 CDC42EP2O14613 210 aa11.13□□□□□ -0.63
RTN3-212ENST00000543123 PRSS23O95084 383 aa11.13□□□□□ -0.63
RTN3-212ENST00000543123 NGFP01138 241 aa11.13□□□□□ -0.63
RTN3-212ENST00000543123 RHCEP18577 417 aa11.13□□□□□ -0.63
RTN3-212ENST00000543123 RGS6P49758 472 aa11.13□□□□□ -0.63
RTN3-212ENST00000543123 LSM6P62312 80 aaKnown RBP11.13□□□□□ -0.63
RTN3-212ENST00000543123 TNFAIP6P98066 277 aaPredicted RBP11.13□□□□□ -0.63
RTN3-212ENST00000543123 FHL1Q13642 323 aa11.13□□□□□ -0.63
RTN3-212ENST00000543123 KRT72Q14CN4 511 aa11.13□□□□□ -0.63
RTN3-212ENST00000543123 MESTQ5EB52 335 aa11.13□□□□□ -0.63
RTN3-212ENST00000543123 C8orf82Q6P1X6 216 aaPredicted RBP11.13□□□□□ -0.63
RTN3-212ENST00000543123 PGM2L1Q6PCE3 622 aa11.13□□□□□ -0.63
RTN3-212ENST00000543123 DNM1P34Q6PK57 102 aa11.13□□□□□ -0.63
RTN3-212ENST00000543123 C12orf54Q6X4T0 127 aa11.13□□□□□ -0.63
RTN3-212ENST00000543123 FAM122BQ7Z309 247 aa11.13□□□□□ -0.63
RTN3-212ENST00000543123 C1QL2Q7Z5L3 287 aa11.13□□□□□ -0.63
RTN3-212ENST00000543123 GLB1L2Q8IW92 636 aa11.13□□□□□ -0.63
RTN3-212ENST00000543123 SPICQ8N5J4 248 aa11.13□□□□□ -0.63
RTN3-212ENST00000543123 NANPQ8TBE9 248 aa11.13□□□□□ -0.63
RTN3-212ENST00000543123 SLC7A13Q8TCU3 470 aa11.13□□□□□ -0.63
RTN3-212ENST00000543123 FAM46AQ96IP4 442 aaKnown RBP11.13□□□□□ -0.63
RTN3-212ENST00000543123 Q96M85 177 aa11.13□□□□□ -0.63
RTN3-212ENST00000543123 GPX7Q96SL4 187 aaPredicted RBP11.13□□□□□ -0.63
RTN3-212ENST00000543123 SUCNR1Q9BXA5 334 aa11.13□□□□□ -0.63
RTN3-212ENST00000543123 MSL2Q9HCI7 577 aa11.13□□□□□ -0.63
RTN3-212ENST00000543123 EMC7Q9NPA0 242 aa11.13□□□□□ -0.63
RTN3-212ENST00000543123 SPAG4Q9NPE6 437 aa11.13□□□□□ -0.63
RTN3-212ENST00000543123 PLEK2Q9NYT0 353 aa11.13□□□□□ -0.63
RTN3-212ENST00000543123 PCDHB10Q9UN67 800 aa11.13□□□□□ -0.63
RTN3-212ENST00000543123 POLR1DQ9Y2S0 133 aa11.13□□□□□ -0.63
RTN3-212ENST00000543123 CACNG2Q9Y698 323 aa11.13□□□□□ -0.63
RTN3-212ENST00000543123 TRIM77I1YAP6 450 aa11.12□□□□□ -0.63
RTN3-212ENST00000543123 KHDRBS3O75525 346 aaKnown RBP11.12□□□□□ -0.63
RTN3-212ENST00000543123 FOXH1O75593 365 aa11.12□□□□□ -0.63
RTN3-212ENST00000543123 MDH1P40925 334 aaKnown RBP11.12□□□□□ -0.63
RTN3-212ENST00000543123 RPS6KA3P51812 740 aa11.12□□□□□ -0.63
RTN3-212ENST00000543123 SMIM11AP58511 58 aa11.12□□□□□ -0.63
RTN3-212ENST00000543123 ACTG1P63261 375 aa11.12□□□□□ -0.63
RTN3-212ENST00000543123 PSG7Q13046 419 aa11.12□□□□□ -0.63
RTN3-212ENST00000543123 CDK5R2Q13319 367 aa11.12□□□□□ -0.63
RTN3-212ENST00000543123 TBPL2Q6SJ96 375 aa11.12□□□□□ -0.63
RTN3-212ENST00000543123 THSD4Q6ZMP0 1018 aa11.12□□□□□ -0.63
RTN3-212ENST00000543123 VASH1Q7L8A9 365 aaPredicted RBP11.12□□□□□ -0.63
RTN3-212ENST00000543123 BPIFB2Q8N4F0 458 aa11.12□□□□□ -0.63
RTN3-212ENST00000543123 KLHL36Q8N4N3 616 aa11.12□□□□□ -0.63
RTN3-212ENST00000543123 SEMA6DQ8NFY4 1073 aa11.12□□□□□ -0.63
RTN3-212ENST00000543123 OR5L1Q8NGL2 311 aa11.12□□□□□ -0.63
RTN3-212ENST00000543123 RSRC1Q96IZ7 334 aaKnown RBP11.12□□□□□ -0.63
RTN3-212ENST00000543123 DCLRE1CQ96SD1 692 aaKnown RBP11.12□□□□□ -0.63
RTN3-212ENST00000543123 RBM4Q9BWF3 364 aaKnown RBP11.12□□□□□ -0.63
RTN3-212ENST00000543123 RERGLQ9H628 205 aa11.12□□□□□ -0.63
RTN3-212ENST00000543123 NRIP3Q9NQ35 241 aa11.12□□□□□ -0.63
RTN3-212ENST00000543123 UBAP1Q9NZ09 502 aa11.12□□□□□ -0.63
RTN3-212ENST00000543123 ABCD2Q9UBJ2 740 aa11.12□□□□□ -0.63
RTN3-212ENST00000543123 ASH2LQ9UBL3 628 aa11.12□□□□□ -0.63
RTN3-212ENST00000543123 KLHL21Q9UJP4 597 aa11.12□□□□□ -0.63
RTN3-212ENST00000543123 PURGQ9UJV8 347 aaKnown RBP11.12□□□□□ -0.63
RTN3-212ENST00000543123 AURKCQ9UQB9 309 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms