RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 PPP1R8Q12972 351 aaKnown RBP12.14□□□□□ -0.47
USP28-209ENST00000540925 GK3PQ14409 553 aa12.14□□□□□ -0.47
USP28-209ENST00000540925 MICAQ29983 383 aa12.14□□□□□ -0.47
USP28-209ENST00000540925 DNAL1Q4LDG9 190 aa12.14□□□□□ -0.47
USP28-209ENST00000540925 ELFN2Q5R3F8 820 aa12.14□□□□□ -0.47
USP28-209ENST00000540925 MBNL2Q5VZF2 373 aaKnown RBP12.14□□□□□ -0.47
USP28-209ENST00000540925 OTPQ5XKR4 325 aa12.14□□□□□ -0.47
USP28-209ENST00000540925 RPL13AP3Q6NVV1 102 aa12.14□□□□□ -0.47
USP28-209ENST00000540925 RASSF6Q6ZTQ3 369 aa12.14□□□□□ -0.47
USP28-209ENST00000540925 VASH1Q7L8A9 365 aaPredicted RBP12.14□□□□□ -0.47
USP28-209ENST00000540925 AQP12AQ8IXF9 295 aa12.14□□□□□ -0.47
USP28-209ENST00000540925 ALDH16A1Q8IZ83 802 aa12.14□□□□□ -0.47
USP28-209ENST00000540925 NPEPL1Q8NDH3 523 aa12.14□□□□□ -0.47
USP28-209ENST00000540925 SYNPRQ8TBG9 265 aa12.14□□□□□ -0.47
USP28-209ENST00000540925 C11orf40Q8WZ69 217 aa12.14□□□□□ -0.47
USP28-209ENST00000540925 NMNAT3Q96T66 252 aa12.14□□□□□ -0.47
USP28-209ENST00000540925 PIMREGQ9BSJ6 248 aa12.14□□□□□ -0.47
USP28-209ENST00000540925 IFT27Q9BW83 186 aa12.14□□□□□ -0.47
USP28-209ENST00000540925 OR51B6Q9H340 312 aa12.14□□□□□ -0.47
USP28-209ENST00000540925 TPK1Q9H3S4 243 aa12.14□□□□□ -0.47
USP28-209ENST00000540925 EGLN3Q9H6Z9 239 aa12.14□□□□□ -0.47
USP28-209ENST00000540925 ATPIF1Q9UII2 106 aa12.14□□□□□ -0.47
USP28-209ENST00000540925 DUSP13Q9UII6 198 aa12.14□□□□□ -0.47
USP28-209ENST00000540925 B9D1Q9UPM9 204 aa12.14□□□□□ -0.47
USP28-209ENST00000540925 JMJD1CQ15652 2540 aa12.14□□□□□ -0.47
USP28-209ENST00000540925 IGHV4-61A0A0C4DH41 118 aa12.13□□□□□ -0.47
USP28-209ENST00000540925 H3BSA7 217 aa12.13□□□□□ -0.47
USP28-209ENST00000540925 GYG2O15488 501 aa12.13□□□□□ -0.47
USP28-209ENST00000540925 SGCEO43556 437 aa12.13□□□□□ -0.47
USP28-209ENST00000540925 TLX2O43763 284 aaPredicted RBP12.13□□□□□ -0.47
USP28-209ENST00000540925 CCNB2O95067 398 aa12.13□□□□□ -0.47
USP28-209ENST00000540925 GPANK1O95872 356 aa12.13□□□□□ -0.47
USP28-209ENST00000540925 NGFP01138 241 aa12.13□□□□□ -0.47
USP28-209ENST00000540925 TFP02787 698 aa12.13□□□□□ -0.47
USP28-209ENST00000540925 HPXP02790 462 aa12.13□□□□□ -0.47
USP28-209ENST00000540925 LCKP06239 509 aa12.13□□□□□ -0.47
USP28-209ENST00000540925 ERCC1P07992 297 aaPredicted RBP12.13□□□□□ -0.47
USP28-209ENST00000540925 TACSTD2P09758 323 aa12.13□□□□□ -0.47
USP28-209ENST00000540925 MMP15P51511 669 aa12.13□□□□□ -0.47
USP28-209ENST00000540925 MRPS11P82912 194 aaKnown RBP12.13□□□□□ -0.47
USP28-209ENST00000540925 BNIP1Q12981 228 aa12.13□□□□□ -0.47
USP28-209ENST00000540925 CCDC92Q53HC0 331 aaPredicted RBP12.13□□□□□ -0.47
USP28-209ENST00000540925 LEG1Q6P5S2 330 aa12.13□□□□□ -0.47
USP28-209ENST00000540925 CD300LDQ6UXZ3 194 aa12.13□□□□□ -0.47
USP28-209ENST00000540925 C1orf174Q8IYL3 243 aa12.13□□□□□ -0.47
USP28-209ENST00000540925 AQP11Q8NBQ7 271 aa12.13□□□□□ -0.47
USP28-209ENST00000540925 SLC26A10Q8NG04 563 aa12.13□□□□□ -0.47
USP28-209ENST00000540925 OR1J1Q8NGS3 322 aa12.13□□□□□ -0.47
USP28-209ENST00000540925 OR4K13Q8NH42 304 aa12.13□□□□□ -0.47
USP28-209ENST00000540925 UBASH3BQ8TF42 649 aa12.13□□□□□ -0.47
USP28-209ENST00000540925 CANT1Q8WVQ1 401 aa12.13□□□□□ -0.47
USP28-209ENST00000540925 CHID1Q9BWS9 393 aa12.13□□□□□ -0.47
USP28-209ENST00000540925 BPESC1Q9GZL8 116 aa12.13□□□□□ -0.47
USP28-209ENST00000540925 SLCO1C1Q9NYB5 712 aa12.13□□□□□ -0.47
USP28-209ENST00000540925 TAAR3PQ9P1P4 343 aa12.13□□□□□ -0.47
USP28-209ENST00000540925 ASH2LQ9UBL3 628 aa12.13□□□□□ -0.47
USP28-209ENST00000540925 NDRG4Q9ULP0 352 aaKnown RBP12.13□□□□□ -0.47
USP28-209ENST00000540925 SAMHD1Q9Y3Z3 626 aaKnown RBP12.13□□□□□ -0.47
USP28-209ENST00000540925 LHFPL6Q9Y693 200 aa12.13□□□□□ -0.47
USP28-209ENST00000540925 TCRBV3S1A0A5B6 114 aa12.12□□□□□ -0.47
USP28-209ENST00000540925 DHRS12A0PJE2 317 aa12.12□□□□□ -0.47
USP28-209ENST00000540925 ARRDC5A6NEK1 342 aa12.12□□□□□ -0.47
USP28-209ENST00000540925 C17orf100A8MU93 164 aa12.12□□□□□ -0.47
USP28-209ENST00000540925 DOK2O60496 412 aa12.12□□□□□ -0.47
USP28-209ENST00000540925 RP2O75695 350 aa12.12□□□□□ -0.47
USP28-209ENST00000540925 IGHV4-31P0DP07 118 aa12.12□□□□□ -0.47
USP28-209ENST00000540925 NAT2P11245 290 aa12.12□□□□□ -0.47
USP28-209ENST00000540925 HOXB6P17509 224 aaKnown RBP12.12□□□□□ -0.47
USP28-209ENST00000540925 CCNOP22674 350 aa12.12□□□□□ -0.47
USP28-209ENST00000540925 MPV17P39210 176 aa12.12□□□□□ -0.47
USP28-209ENST00000540925 COX10Q12887 443 aa12.12□□□□□ -0.47
USP28-209ENST00000540925 KRTAP27-1Q3LI81 207 aa12.12□□□□□ -0.47
USP28-209ENST00000540925 C6orf52Q5T4I8 152 aa12.12□□□□□ -0.47
USP28-209ENST00000540925 DNM1P34Q6PK57 102 aa12.12□□□□□ -0.47
USP28-209ENST00000540925 LNX2Q8N448 690 aa12.12□□□□□ -0.47
USP28-209ENST00000540925 PAPD5Q8NDF8 572 aaKnown RBP12.12□□□□□ -0.47
USP28-209ENST00000540925 ZNF540Q8NDQ6 660 aa12.12□□□□□ -0.47
USP28-209ENST00000540925 SDR9C7Q8NEX9 313 aa12.12□□□□□ -0.47
USP28-209ENST00000540925 SLC25A40Q8TBP6 338 aa12.12□□□□□ -0.47
USP28-209ENST00000540925 KLF14Q8TD94 323 aaPredicted RBP12.12□□□□□ -0.47
USP28-209ENST00000540925 IPCEF1Q8WWN9 437 aaPredicted RBP12.12□□□□□ -0.47
USP28-209ENST00000540925 GTF3AQ92664 365 aaKnown RBP12.12□□□□□ -0.47
USP28-209ENST00000540925 C4orf45Q96LM5 186 aa12.12□□□□□ -0.47
USP28-209ENST00000540925 OR2J1Q9GZK6 312 aa12.12□□□□□ -0.47
USP28-209ENST00000540925 REEP1Q9H902 201 aa12.12□□□□□ -0.47
USP28-209ENST00000540925 RPRD1BQ9NQG5 326 aaKnown RBP12.12□□□□□ -0.47
USP28-209ENST00000540925 TBCCD1Q9NVR7 557 aa12.12□□□□□ -0.47
USP28-209ENST00000540925 NKIRAS2Q9NYR9 191 aa12.12□□□□□ -0.47
USP28-209ENST00000540925 KLHL21Q9UJP4 597 aa12.12□□□□□ -0.47
USP28-209ENST00000540925 POMPQ9Y244 141 aa12.12□□□□□ -0.47
USP28-209ENST00000540925 U3KQV3 271 aa12.12□□□□□ -0.47
USP28-209ENST00000540925 A0A1W2PPW3 197 aa12.11□□□□□ -0.47
USP28-209ENST00000540925 LYNX1G3V0Z9 82 aa12.11□□□□□ -0.47
USP28-209ENST00000540925 RER1O15258 196 aa12.11□□□□□ -0.47
USP28-209ENST00000540925 LILRA1O75019 489 aa12.11□□□□□ -0.47
USP28-209ENST00000540925 DNAJC8O75937 253 aaPredicted RBP12.11□□□□□ -0.47
USP28-209ENST00000540925 ADH4P08319 380 aa12.11□□□□□ -0.47
USP28-209ENST00000540925 LYNX1P0DP58 116 aa12.11□□□□□ -0.47
USP28-209ENST00000540925 ZNF23P17027 643 aa12.11□□□□□ -0.47
USP28-209ENST00000540925 GGT2P36268 569 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms