RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 UEVLDQ8IX04 471 aa12.28□□□□□ -0.44
RTN3-210ENST00000540798 ASCC1Q8N9N2 400 aaKnown RBP12.28□□□□□ -0.44
RTN3-210ENST00000540798 ZBTB44Q8NCP5 570 aa12.28□□□□□ -0.44
RTN3-210ENST00000540798 NOXO1Q8NFA2 376 aa12.28□□□□□ -0.44
RTN3-210ENST00000540798 OR5M1Q8NGP8 315 aa12.28□□□□□ -0.44
RTN3-210ENST00000540798 CCDC120Q96HB5 630 aa12.28□□□□□ -0.44
RTN3-210ENST00000540798 DDX28Q9NUL7 540 aaKnown RBP12.28□□□□□ -0.44
RTN3-210ENST00000540798 AKAP7Q9P0M2 348 aaPredicted RBP12.28□□□□□ -0.44
RTN3-210ENST00000540798 CYB5R1Q9UHQ9 305 aa12.28□□□□□ -0.44
RTN3-210ENST00000540798 FBXL3Q9UKT7 428 aa12.28□□□□□ -0.44
RTN3-210ENST00000540798 A0A0A6YYJ9 748 aa12.28□□□□□ -0.44
RTN3-210ENST00000540798 CTRB1P17538 263 aa12.28□□□□□ -0.44
RTN3-210ENST00000540798 DCTDP32321 178 aa12.28□□□□□ -0.44
RTN3-210ENST00000540798 IGSF11Q5DX21 431 aa12.28□□□□□ -0.44
RTN3-210ENST00000540798 CTRB2Q6GPI1 263 aa12.28□□□□□ -0.44
RTN3-210ENST00000540798 TMEM225Q6GV28 225 aa12.28□□□□□ -0.44
RTN3-210ENST00000540798 LINGO2Q7L985 606 aa12.28□□□□□ -0.44
RTN3-210ENST00000540798 NOXA1Q86UR1 476 aa12.28□□□□□ -0.44
RTN3-210ENST00000540798 SLC51BQ86UW2 128 aa12.28□□□□□ -0.44
RTN3-210ENST00000540798 OR52I2Q8NH67 350 aa12.28□□□□□ -0.44
RTN3-210ENST00000540798 C15orf40Q8WUR7 153 aa12.28□□□□□ -0.44
RTN3-210ENST00000540798 C11orf40Q8WZ69 217 aa12.28□□□□□ -0.44
RTN3-210ENST00000540798 AKAP1Q92667 903 aaKnown RBP eCLIP12.28□□□□□ -0.44
RTN3-210ENST00000540798 DHDHQ9UQ10 334 aa12.28□□□□□ -0.44
RTN3-210ENST00000540798 AQP7P3A6NL99 342 aa12.27□□□□□ -0.44
RTN3-210ENST00000540798 ECDO95905 644 aaPredicted RBP12.27□□□□□ -0.44
RTN3-210ENST00000540798 ACHEP22303 614 aa12.27□□□□□ -0.44
RTN3-210ENST00000540798 MMP16P51512 607 aa12.27□□□□□ -0.44
RTN3-210ENST00000540798 MLF1P58340 268 aa12.27□□□□□ -0.44
RTN3-210ENST00000540798 PLA2G7Q13093 441 aa12.27□□□□□ -0.44
RTN3-210ENST00000540798 RNASE12Q5GAN4 147 aaKnown RBP12.27□□□□□ -0.44
RTN3-210ENST00000540798 LINC00469Q8N7U9 141 aa12.27□□□□□ -0.44
RTN3-210ENST00000540798 OR6X1Q8NH79 312 aa12.27□□□□□ -0.44
RTN3-210ENST00000540798 SLC25A28Q96A46 364 aa12.27□□□□□ -0.44
RTN3-210ENST00000540798 OXGR1Q96P68 337 aa12.27□□□□□ -0.44
RTN3-210ENST00000540798 EMC6Q9BV81 110 aa12.27□□□□□ -0.44
RTN3-210ENST00000540798 KIF26BQ2KJY2 2108 aa12.27□□□□□ -0.44
RTN3-210ENST00000540798 PHF3Q92576 2039 aaKnown RBP12.27□□□□□ -0.45
RTN3-210ENST00000540798 A0A1W2PNR3 127 aa12.27□□□□□ -0.45
RTN3-210ENST00000540798 SLC17A2O00624 439 aa12.27□□□□□ -0.45
RTN3-210ENST00000540798 KRT33AO76009 404 aa12.27□□□□□ -0.45
RTN3-210ENST00000540798 GLSO94925 669 aaPredicted RBP12.27□□□□□ -0.45
RTN3-210ENST00000540798 IGHEP01854 428 aa12.27□□□□□ -0.45
RTN3-210ENST00000540798 ITGA5P08648 1049 aa12.27□□□□□ -0.45
RTN3-210ENST00000540798 GIFP27352 417 aa12.27□□□□□ -0.45
RTN3-210ENST00000540798 LAP3P28838 519 aa12.27□□□□□ -0.45
RTN3-210ENST00000540798 FOLR3P41439 243 aa12.27□□□□□ -0.45
RTN3-210ENST00000540798 TAS2R20P59543 309 aa12.27□□□□□ -0.45
RTN3-210ENST00000540798 MRPS15P82914 257 aaKnown RBP12.27□□□□□ -0.45
RTN3-210ENST00000540798 CD83Q01151 205 aa12.27□□□□□ -0.45
RTN3-210ENST00000540798 ZNF528Q3MIS6 628 aa12.27□□□□□ -0.45
RTN3-210ENST00000540798 TMEM69Q5SWH9 247 aa12.27□□□□□ -0.45
RTN3-210ENST00000540798 PRAMEF20Q5VT98 475 aa12.27□□□□□ -0.45
RTN3-210ENST00000540798 SLC25A47Q6Q0C1 308 aa12.27□□□□□ -0.45
RTN3-210ENST00000540798 BTN2A1Q7KYR7 527 aa12.27□□□□□ -0.45
RTN3-210ENST00000540798 LINC00346Q8IVM7 164 aa12.27□□□□□ -0.45
RTN3-210ENST00000540798 SERPINA12Q8IW75 414 aa12.27□□□□□ -0.45
RTN3-210ENST00000540798 DACT3Q96B18 629 aaPredicted RBP12.27□□□□□ -0.45
RTN3-210ENST00000540798 SLC25A44Q96H78 314 aaPredicted RBP12.27□□□□□ -0.45
RTN3-210ENST00000540798 RBP7Q96R05 134 aa12.27□□□□□ -0.45
RTN3-210ENST00000540798 OR5B2Q96R09 309 aa12.27□□□□□ -0.45
RTN3-210ENST00000540798 SMOC1Q9H4F8 434 aa12.27□□□□□ -0.45
RTN3-210ENST00000540798 SLC17A5Q9NRA2 495 aa12.27□□□□□ -0.45
RTN3-210ENST00000540798 NUDT15Q9NV35 164 aa12.27□□□□□ -0.45
RTN3-210ENST00000540798 OR52A1Q9UKL2 312 aa12.27□□□□□ -0.45
RTN3-210ENST00000540798 EMC9Q9Y3B6 208 aa12.27□□□□□ -0.45
RTN3-210ENST00000540798 KIAA1549Q9HCM3 1950 aa12.27□□□□□ -0.45
RTN3-210ENST00000540798 ANKRD20A5PA0PJZ0 165 aa12.26□□□□□ -0.45
RTN3-210ENST00000540798 XRCC3O43542 346 aa12.26□□□□□ -0.45
RTN3-210ENST00000540798 PMS2P2O95744 297 aa12.26□□□□□ -0.45
RTN3-210ENST00000540798 CCL3P10147 92 aa12.26□□□□□ -0.45
RTN3-210ENST00000540798 SSR4P51571 173 aa12.26□□□□□ -0.45
RTN3-210ENST00000540798 H3F3AP84243 136 aa12.26□□□□□ -0.45
RTN3-210ENST00000540798 OLFML2AQ68BL7 652 aa12.26□□□□□ -0.45
RTN3-210ENST00000540798 ANKRD16Q6P6B7 361 aa12.26□□□□□ -0.45
RTN3-210ENST00000540798 HDDC2Q7Z4H3 204 aa12.26□□□□□ -0.45
RTN3-210ENST00000540798 LYPD6Q86Y78 171 aa12.26□□□□□ -0.45
RTN3-210ENST00000540798 OR10S1Q8NGN2 331 aa12.26□□□□□ -0.45
RTN3-210ENST00000540798 CACNG6Q9BXT2 260 aa12.26□□□□□ -0.45
RTN3-210ENST00000540798 FAM206AQ9NX38 181 aa12.26□□□□□ -0.45
RTN3-210ENST00000540798 PCSK5Q92824 1860 aa12.26□□□□□ -0.45
RTN3-210ENST00000540798 DHFRP00374 187 aa12.26□□□□□ -0.45
RTN3-210ENST00000540798 IGHG1P01857 330 aa12.26□□□□□ -0.45
RTN3-210ENST00000540798 TMIGD3P0DMS9 266 aaPredicted RBP12.26□□□□□ -0.45
RTN3-210ENST00000540798 LIFP15018 202 aa12.26□□□□□ -0.45
RTN3-210ENST00000540798 SNTB2Q13425 540 aaKnown RBP12.26□□□□□ -0.45
RTN3-210ENST00000540798 TOMM20Q15388 145 aa12.26□□□□□ -0.45
RTN3-210ENST00000540798 KCNMB1Q16558 191 aa12.26□□□□□ -0.45
RTN3-210ENST00000540798 ELFN2Q5R3F8 820 aa12.26□□□□□ -0.45
RTN3-210ENST00000540798 BCL2L15Q5TBC7 163 aa12.26□□□□□ -0.45
RTN3-210ENST00000540798 CDH24Q86UP0 819 aa12.26□□□□□ -0.45
RTN3-210ENST00000540798 CCDC28AQ8IWP9 274 aa12.26□□□□□ -0.45
RTN3-210ENST00000540798 GIMAP1Q8WWP7 306 aa12.26□□□□□ -0.45
RTN3-210ENST00000540798 FCAMRQ8WWV6 532 aa12.26□□□□□ -0.45
RTN3-210ENST00000540798 TMEM246Q9BRR3 403 aa12.26□□□□□ -0.45
RTN3-210ENST00000540798 BEX2Q9BXY8 128 aa12.26□□□□□ -0.45
RTN3-210ENST00000540798 TMEM185BQ9H7F4 350 aa12.26□□□□□ -0.45
RTN3-210ENST00000540798 HRASLSQ9HDD0 168 aa12.26□□□□□ -0.45
RTN3-210ENST00000540798 MCUBQ9NWR8 336 aa12.26□□□□□ -0.45
RTN3-210ENST00000540798 CFAP54Q96N23 3096 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms