RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 CLDN22Q8N7P3 220 aa11.42□□□□□ -0.58
SS18-204ENST00000539244 LRRC75AQ8NAA5 344 aa11.42□□□□□ -0.58
SS18-204ENST00000539244 DUX5Q96PT3 197 aa11.42□□□□□ -0.58
SS18-204ENST00000539244 DCLRE1CQ96SD1 692 aaKnown RBP11.42□□□□□ -0.58
SS18-204ENST00000539244 MRI1Q9BV20 369 aa11.42□□□□□ -0.58
SS18-204ENST00000539244 C1QTNF5Q9BXJ0 243 aa11.42□□□□□ -0.58
SS18-204ENST00000539244 SLITRK2Q9H156 845 aa11.42□□□□□ -0.58
SS18-204ENST00000539244 UNKLQ9H9P5 680 aaKnown RBP11.42□□□□□ -0.58
SS18-204ENST00000539244 MAN2C1Q9NTJ4 1040 aa11.42□□□□□ -0.58
SS18-204ENST00000539244 IL19Q9UHD0 177 aa11.42□□□□□ -0.58
SS18-204ENST00000539244 DOCK11Q5JSL3 2073 aa11.41□□□□□ -0.58
SS18-204ENST00000539244 ABHD16AO95870 558 aa11.41□□□□□ -0.58
SS18-204ENST00000539244 TNFRSF1BP20333 461 aa11.41□□□□□ -0.58
SS18-204ENST00000539244 MSR1P21757 451 aa11.41□□□□□ -0.58
SS18-204ENST00000539244 GUCA1AP43080 201 aaPredicted RBP11.41□□□□□ -0.58
SS18-204ENST00000539244 PAX2Q02962 417 aa11.41□□□□□ -0.58
SS18-204ENST00000539244 TOP3AQ13472 1001 aaPredicted RBP11.41□□□□□ -0.58
SS18-204ENST00000539244 PDLIM3Q53GG5 364 aaPredicted RBP11.41□□□□□ -0.58
SS18-204ENST00000539244 NANOGP8Q6NSW7 305 aa11.41□□□□□ -0.58
SS18-204ENST00000539244 MUC20Q8N307 709 aaPredicted RBP11.41□□□□□ -0.58
SS18-204ENST00000539244 SLC25A28Q96A46 364 aa11.41□□□□□ -0.58
SS18-204ENST00000539244 POFUT1Q9H488 388 aa11.41□□□□□ -0.58
SS18-204ENST00000539244 IL20RAQ9UHF4 553 aa11.41□□□□□ -0.58
SS18-204ENST00000539244 LRCH1Q9Y2L9 728 aa11.41□□□□□ -0.58
SS18-204ENST00000539244 A6NIZ1 184 aa11.4□□□□□ -0.58
SS18-204ENST00000539244 C12orf71A8MTZ7 269 aa11.4□□□□□ -0.58
SS18-204ENST00000539244 PIP5K1CO60331 668 aa11.4□□□□□ -0.58
SS18-204ENST00000539244 SHOX2O60902 331 aaPredicted RBP11.4□□□□□ -0.58
SS18-204ENST00000539244 MDH2P40926 338 aaKnown RBP11.4□□□□□ -0.58
SS18-204ENST00000539244 CTXN1P60606 82 aa11.4□□□□□ -0.58
SS18-204ENST00000539244 RAP1BP61224 184 aa11.4□□□□□ -0.58
SS18-204ENST00000539244 RAP1AP62834 184 aa11.4□□□□□ -0.58
SS18-204ENST00000539244 FHL1Q13642 323 aa11.4□□□□□ -0.58
SS18-204ENST00000539244 CYLC2Q14093 348 aaPredicted RBP11.4□□□□□ -0.58
SS18-204ENST00000539244 SLC9A3R2Q15599 337 aa11.4□□□□□ -0.58
SS18-204ENST00000539244 ANKDD1AQ495B1 522 aa11.4□□□□□ -0.58
SS18-204ENST00000539244 ESCO2Q56NI9 601 aa11.4□□□□□ -0.58
SS18-204ENST00000539244 LEG1Q6P5S2 330 aa11.4□□□□□ -0.58
SS18-204ENST00000539244 OR2Z1Q8NG97 314 aa11.4□□□□□ -0.58
SS18-204ENST00000539244 OR8J3Q8NGG0 315 aa11.4□□□□□ -0.58
SS18-204ENST00000539244 DACT3Q96B18 629 aaPredicted RBP11.4□□□□□ -0.58
SS18-204ENST00000539244 BPIFA2Q96DR5 249 aa11.4□□□□□ -0.58
SS18-204ENST00000539244 THOC1Q96FV9 657 aaKnown RBP11.4□□□□□ -0.58
SS18-204ENST00000539244 SH3GL1Q99961 368 aa11.4□□□□□ -0.58
SS18-204ENST00000539244 POLE4Q9NR33 117 aa11.4□□□□□ -0.58
SS18-204ENST00000539244 OR5V1Q9UGF6 321 aa11.4□□□□□ -0.58
SS18-204ENST00000539244 PPP1R3CQ9UQK1 317 aa11.4□□□□□ -0.58
SS18-204ENST00000539244 A0A1W2PPL8 197 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 CEACAM18A8MTB9 384 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 TMEM178BH3BS89 294 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 IFNL4K9M1U5 179 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 FXYD1O00168 92 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 FBP2O00757 339 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 SURF4O15260 269 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 FSTL3O95633 263 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 PLATP00750 562 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 IFNA14P01570 189 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 SCG5P05408 212 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 WNT2P09544 360 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 CD80P33681 288 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 RBMXP38159 391 aaKnown RBP11.39□□□□□ -0.59
SS18-204ENST00000539244 OR1E2P47887 323 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 MTNR1AP48039 350 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 SCRN3Q0VDG4 424 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 ST3GAL3Q11203 375 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 OCLNQ16625 522 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 RABL3Q5HYI8 236 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 ERICH5Q6P6B1 374 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 PARP8Q8N3A8 854 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 FAM156AQ8NDB6 213 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 ITLN1Q8WWA0 313 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 UPRTQ96BW1 309 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 HAVCR1Q96D42 359 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 PRRC1Q96M27 445 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 COG8Q96MW5 612 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 OR2V2Q96R30 315 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 ECSITQ9BQ95 431 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 MS4A7Q9GZW8 240 aaPredicted RBP11.39□□□□□ -0.59
SS18-204ENST00000539244 GCM1Q9NP62 436 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 A4GNTQ9UNA3 340 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 MMP24Q9Y5R2 645 aa11.39□□□□□ -0.59
SS18-204ENST00000539244 J3QW42 95 aa11.38□□□□□ -0.59
SS18-204ENST00000539244 AHCYL1O43865 530 aa11.38□□□□□ -0.59
SS18-204ENST00000539244 DOK2O60496 412 aa11.38□□□□□ -0.59
SS18-204ENST00000539244 NPPAP01160 153 aa11.38□□□□□ -0.59
SS18-204ENST00000539244 IGHV4-38-2P0DP08 117 aa11.38□□□□□ -0.59
SS18-204ENST00000539244 IFI30P13284 250 aa11.38□□□□□ -0.59
SS18-204ENST00000539244 RAC2P15153 192 aa11.38□□□□□ -0.59
SS18-204ENST00000539244 HTR5AP47898 357 aa11.38□□□□□ -0.59
SS18-204ENST00000539244 MMP16P51512 607 aa11.38□□□□□ -0.59
SS18-204ENST00000539244 DEFA6Q01524 100 aa11.38□□□□□ -0.59
SS18-204ENST00000539244 COQ5Q5HYK3 327 aa11.38□□□□□ -0.59
SS18-204ENST00000539244 METTL21CQ5VZV1 264 aa11.38□□□□□ -0.59
SS18-204ENST00000539244 LRRN1Q6UXK5 716 aa11.38□□□□□ -0.59
SS18-204ENST00000539244 VASH1Q7L8A9 365 aaPredicted RBP11.38□□□□□ -0.59
SS18-204ENST00000539244 IGFN1Q86VF2 1251 aa11.38□□□□□ -0.59
SS18-204ENST00000539244 OR52E2Q8NGJ4 325 aa11.38□□□□□ -0.59
SS18-204ENST00000539244 DYDC1Q8WWB3 177 aa11.38□□□□□ -0.59
SS18-204ENST00000539244 CMBLQ96DG6 245 aa11.38□□□□□ -0.59
SS18-204ENST00000539244 ATP6V1G3Q96LB4 118 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms