RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 ZNF519Q8TB69 540 aa10.85□□□□□ -0.67
CLSTN3-208ENST00000538933 TMEM163Q8TC26 289 aa10.85□□□□□ -0.67
CLSTN3-208ENST00000538933 HDAC2Q92769 488 aaKnown RBP10.85□□□□□ -0.67
CLSTN3-208ENST00000538933 TMEM45BQ96B21 275 aa10.85□□□□□ -0.67
CLSTN3-208ENST00000538933 SNX18Q96RF0 628 aa10.85□□□□□ -0.67
CLSTN3-208ENST00000538933 ALG12Q9BV10 488 aa10.85□□□□□ -0.67
CLSTN3-208ENST00000538933 ANKRD60Q9BZ19 345 aa10.85□□□□□ -0.67
CLSTN3-208ENST00000538933 FN3KQ9H479 309 aa10.85□□□□□ -0.67
CLSTN3-208ENST00000538933 RPRD1BQ9NQG5 326 aaKnown RBP10.85□□□□□ -0.67
CLSTN3-208ENST00000538933 NPAP1Q9NZP6 1156 aa10.85□□□□□ -0.67
CLSTN3-208ENST00000538933 IGHV4-61A0A0C4DH41 118 aa10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 TMEM89A2RUT3 159 aa10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 FAM183AA6NL82 134 aa10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 CENPBD1B2RD01 187 aa10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 ABCD4O14678 606 aa10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 AHCYL1O43865 530 aa10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 TGFAP01135 160 aa10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 GNAO1P09471 354 aa10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 CSF3P09919 207 aa10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 MYF6P23409 242 aa10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 IL32P24001 234 aa10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 CRABP1P29762 137 aa10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 CDKN2AP42771 156 aaKnown RBP10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 GUCA1AP43080 201 aaPredicted RBP10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 NR4A2P43354 598 aa10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 EFNA4P52798 201 aa10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 DEFA6Q01524 100 aa10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 LCN1P1Q5VSP4 162 aa10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 MEDAGQ5VYS4 303 aa10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 NUFIP2Q7Z417 695 aaKnown RBP10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 ABHD12BQ7Z5M8 362 aaPredicted RBP10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 CPOQ8IVL8 374 aa10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 GID4Q8IVV7 300 aa10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 ENTHD1Q8IYW4 607 aa10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 PROKR2Q8NFJ6 384 aa10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 OR9Q1Q8NGQ5 310 aa10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 OR2T4Q8NH00 348 aa10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 RFKQ969G6 155 aa10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 LRR1Q96L50 414 aa10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 OR2M2Q96R28 347 aa10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 DHRS9Q9BPW9 319 aa10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 USB1Q9BQ65 265 aaKnown RBP10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 ULBP2Q9BZM5 246 aa10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 SYT4Q9H2B2 425 aa10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 OR51V1Q9H2C8 321 aa10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 SRA1Q9HD15 236 aaKnown RBP10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 GLTPQ9NZD2 209 aa10.84□□□□□ -0.67
CLSTN3-208ENST00000538933 KMT2CQ8NEZ4 4911 aaKnown RBP10.83□□□□□ -0.68
CLSTN3-208ENST00000538933 SLC22A23A1A5C7 686 aa10.83□□□□□ -0.68
CLSTN3-208ENST00000538933 DENRO43583 198 aaKnown RBP10.83□□□□□ -0.68
CLSTN3-208ENST00000538933 SLC16A7O60669 478 aa10.83□□□□□ -0.68
CLSTN3-208ENST00000538933 IGHV3-9P01782 118 aa10.83□□□□□ -0.68
CLSTN3-208ENST00000538933 HLA-DQA2P01906 255 aa10.83□□□□□ -0.68
CLSTN3-208ENST00000538933 PGA4P0DJD7 388 aa10.83□□□□□ -0.68
CLSTN3-208ENST00000538933 PGA3P0DJD8 388 aa10.83□□□□□ -0.68
CLSTN3-208ENST00000538933 ZNF84P51523 738 aa10.83□□□□□ -0.68
CLSTN3-208ENST00000538933 SNRPGP62308 76 aaKnown RBP10.83□□□□□ -0.68
CLSTN3-208ENST00000538933 GGTLC2Q14390 218 aa10.83□□□□□ -0.68
CLSTN3-208ENST00000538933 MAD2L1BPQ15013 274 aaPredicted RBP10.83□□□□□ -0.68
CLSTN3-208ENST00000538933 THEM4Q5T1C6 240 aa10.83□□□□□ -0.68
CLSTN3-208ENST00000538933 USP51Q70EK9 711 aa10.83□□□□□ -0.68
CLSTN3-208ENST00000538933 MUC15Q8N387 334 aa10.83□□□□□ -0.68
CLSTN3-208ENST00000538933 ZIC4Q8N9L1 334 aa10.83□□□□□ -0.68
CLSTN3-208ENST00000538933 POMGNT2Q8NAT1 580 aa10.83□□□□□ -0.68
CLSTN3-208ENST00000538933 OR6K6Q8NGW6 343 aa10.83□□□□□ -0.68
CLSTN3-208ENST00000538933 CNIH3Q8TBE1 160 aa10.83□□□□□ -0.68
CLSTN3-208ENST00000538933 NSMAFQ92636 917 aa10.83□□□□□ -0.68
CLSTN3-208ENST00000538933 KISS1RQ969F8 398 aaPredicted RBP10.83□□□□□ -0.68
CLSTN3-208ENST00000538933 MED20Q9H944 212 aa10.83□□□□□ -0.68
CLSTN3-208ENST00000538933 HINT3Q9NQE9 182 aaKnown RBP10.83□□□□□ -0.68
CLSTN3-208ENST00000538933 DNAJC27Q9NZQ0 273 aa10.83□□□□□ -0.68
CLSTN3-208ENST00000538933 ING1Q9UK53 422 aaPredicted RBP10.83□□□□□ -0.68
CLSTN3-208ENST00000538933 A0A0A6YYJ9 748 aa10.82□□□□□ -0.68
CLSTN3-208ENST00000538933 A0A1W2PPL8 197 aa10.82□□□□□ -0.68
CLSTN3-208ENST00000538933 OR6C68A6NDL8 312 aa10.82□□□□□ -0.68
CLSTN3-208ENST00000538933 ZNF587BE7ETH6 402 aa10.82□□□□□ -0.68
CLSTN3-208ENST00000538933 FAM20BO75063 409 aa10.82□□□□□ -0.68
CLSTN3-208ENST00000538933 KHDRBS3O75525 346 aaKnown RBP10.82□□□□□ -0.68
CLSTN3-208ENST00000538933 QDPRP09417 244 aa10.82□□□□□ -0.68
CLSTN3-208ENST00000538933 FMO3P31513 532 aa10.82□□□□□ -0.68
CLSTN3-208ENST00000538933 ATP6V1E1P36543 226 aa10.82□□□□□ -0.68
CLSTN3-208ENST00000538933 FMODQ06828 376 aa10.82□□□□□ -0.68
CLSTN3-208ENST00000538933 APOFQ13790 326 aa10.82□□□□□ -0.68
CLSTN3-208ENST00000538933 NXNL2Q5VZ03 156 aa10.82□□□□□ -0.68
CLSTN3-208ENST00000538933 B3GLCTQ6Y288 498 aa10.82□□□□□ -0.68
CLSTN3-208ENST00000538933 BHLHA15Q7RTS1 189 aaPredicted RBP10.82□□□□□ -0.68
CLSTN3-208ENST00000538933 C20orf196Q8IYI0 205 aa10.82□□□□□ -0.68
CLSTN3-208ENST00000538933 ZNF786Q8N393 782 aa10.82□□□□□ -0.68
CLSTN3-208ENST00000538933 NPEPL1Q8NDH3 523 aa10.82□□□□□ -0.68
CLSTN3-208ENST00000538933 UBE2FQ969M7 185 aa10.82□□□□□ -0.68
CLSTN3-208ENST00000538933 RADILQ96JH8 1075 aa10.82□□□□□ -0.68
CLSTN3-208ENST00000538933 ALKBH3Q96Q83 286 aaPredicted RBP10.82□□□□□ -0.68
CLSTN3-208ENST00000538933 NUAK2Q9H093 628 aa10.82□□□□□ -0.68
CLSTN3-208ENST00000538933 SCN3BQ9NY72 215 aa10.82□□□□□ -0.68
CLSTN3-208ENST00000538933 VSX1Q9NZR4 365 aaPredicted RBP10.82□□□□□ -0.68
CLSTN3-208ENST00000538933 AASSQ9UDR5 926 aa10.82□□□□□ -0.68
CLSTN3-208ENST00000538933 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.82□□□□□ -0.68
CLSTN3-208ENST00000538933 LRCH1Q9Y2L9 728 aa10.82□□□□□ -0.68
CLSTN3-208ENST00000538933 LRRC42Q9Y546 428 aa10.82□□□□□ -0.68
CLSTN3-208ENST00000538933 FKBP7Q9Y680 259 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms