RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 LCN2P80188 198 aa12.5□□□□□ -0.41
VPS28-215ENST00000531924 ZBED5Q49AG3 693 aa12.5□□□□□ -0.41
VPS28-215ENST00000531924 FOXL2NBQ6ZUU3 175 aa12.5□□□□□ -0.41
VPS28-215ENST00000531924 C1QL2Q7Z5L3 287 aa12.5□□□□□ -0.41
VPS28-215ENST00000531924 LRRC75AQ8NAA5 344 aa12.5□□□□□ -0.41
VPS28-215ENST00000531924 SEMA6DQ8NFY4 1073 aa12.5□□□□□ -0.41
VPS28-215ENST00000531924 ZNF570Q96NI8 536 aa12.5□□□□□ -0.41
VPS28-215ENST00000531924 HOPXQ9BPY8 73 aaPredicted RBP12.5□□□□□ -0.41
VPS28-215ENST00000531924 EFCAB1Q9HAE3 211 aa12.5□□□□□ -0.41
VPS28-215ENST00000531924 TUBG2Q9NRH3 451 aa12.5□□□□□ -0.41
VPS28-215ENST00000531924 MAN2C1Q9NTJ4 1040 aa12.5□□□□□ -0.41
VPS28-215ENST00000531924 A0A087WUU8 490 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 SURF4O15260 269 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 SGCEO43556 437 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 ICMTO60725 284 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 CCDC22O60826 627 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 DEAF1O75398 565 aaPredicted RBP12.49□□□□□ -0.41
VPS28-215ENST00000531924 GMNNO75496 209 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 FOXH1O75593 365 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 UBOX5O94941 541 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 SERPINA1P01009 418 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 ADH4P08319 380 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 COX5BP10606 129 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 COX4I1P13073 169 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 ADRA2CP18825 462 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 TNFRSF1AP19438 455 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 FPR2P25090 351 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 SLC7A2P52569 658 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 GUCY1A3Q02108 690 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 PSG7Q13046 419 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 ENDOGQ14249 297 aaKnown RBP12.49□□□□□ -0.41
VPS28-215ENST00000531924 HSP90B2PQ58FF3 399 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 CGB2Q6NT52 195 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 C1orf94Q6P1W5 598 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 TBPL2Q6SJ96 375 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 RBMS3Q6XE24 437 aaKnown RBP12.49□□□□□ -0.41
VPS28-215ENST00000531924 USP43Q70EL4 1123 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 SLC15A3Q8IY34 581 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 KLHL36Q8N4N3 616 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 C3orf56Q8N813 242 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 OR2Z1Q8NG97 314 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 HSH2DQ96JZ2 352 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 Q96M85 177 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 COG8Q96MW5 612 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 RBM4Q9BWF3 364 aaKnown RBP12.49□□□□□ -0.41
VPS28-215ENST00000531924 TMPRSS13Q9BYE2 586 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 KRCC1Q9NPI7 259 aaPredicted RBP12.49□□□□□ -0.41
VPS28-215ENST00000531924 TBCCD1Q9NVR7 557 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 PLEK2Q9NYT0 353 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 POLR1DQ9Y2S0 133 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 ADAM18Q9Y3Q7 739 aa12.49□□□□□ -0.41
VPS28-215ENST00000531924 PRSS37A4D1T9 235 aa12.48□□□□□ -0.41
VPS28-215ENST00000531924 FFAR1O14842 300 aa12.48□□□□□ -0.41
VPS28-215ENST00000531924 AVPP01185 164 aa12.48□□□□□ -0.41
VPS28-215ENST00000531924 CD55P08174 381 aa12.48□□□□□ -0.41
VPS28-215ENST00000531924 LIMS1P48059 325 aa12.48□□□□□ -0.41
VPS28-215ENST00000531924 CENPAP49450 140 aa12.48□□□□□ -0.41
VPS28-215ENST00000531924 HILS1P60008 231 aa12.48□□□□□ -0.41
VPS28-215ENST00000531924 FGD3Q5JSP0 725 aa12.48□□□□□ -0.41
VPS28-215ENST00000531924 C1orf229Q6ZS94 237 aaPredicted RBP12.48□□□□□ -0.41
VPS28-215ENST00000531924 TMPRSS11FQ6ZWK6 438 aa12.48□□□□□ -0.41
VPS28-215ENST00000531924 CBLL1Q75N03 491 aa12.48□□□□□ -0.41
VPS28-215ENST00000531924 SPICQ8N5J4 248 aa12.48□□□□□ -0.41
VPS28-215ENST00000531924 FAM216AQ8WUB2 273 aa12.48□□□□□ -0.41
VPS28-215ENST00000531924 CMBLQ96DG6 245 aa12.48□□□□□ -0.41
VPS28-215ENST00000531924 KCTD14Q9BQ13 255 aaPredicted RBP12.48□□□□□ -0.41
VPS28-215ENST00000531924 ANKRD19PQ9H560 264 aa12.48□□□□□ -0.41
VPS28-215ENST00000531924 NMNAT1Q9HAN9 279 aaPredicted RBP12.48□□□□□ -0.41
VPS28-215ENST00000531924 KLHL21Q9UJP4 597 aa12.48□□□□□ -0.41
VPS28-215ENST00000531924 PURGQ9UJV8 347 aaKnown RBP12.48□□□□□ -0.41
VPS28-215ENST00000531924 RPS6KA6Q9UK32 745 aa12.48□□□□□ -0.41
VPS28-215ENST00000531924 AURKCQ9UQB9 309 aa12.48□□□□□ -0.41
VPS28-215ENST00000531924 NPTNQ9Y639 398 aa12.48□□□□□ -0.41
VPS28-215ENST00000531924 TEX13CA0A0J9YWL9 993 aa12.47□□□□□ -0.41
VPS28-215ENST00000531924 CDC42EP2O14613 210 aa12.47□□□□□ -0.41
VPS28-215ENST00000531924 SLC16A7O60669 478 aa12.47□□□□□ -0.41
VPS28-215ENST00000531924 KHDRBS3O75525 346 aaKnown RBP12.47□□□□□ -0.41
VPS28-215ENST00000531924 NDUFB2O95178 105 aa12.47□□□□□ -0.41
VPS28-215ENST00000531924 H1F0P07305 194 aaKnown RBP12.47□□□□□ -0.41
VPS28-215ENST00000531924 FUT4P22083 530 aa12.47□□□□□ -0.41
VPS28-215ENST00000531924 CFPP27918 469 aa12.47□□□□□ -0.41
VPS28-215ENST00000531924 GSK3BP49841 420 aa12.47□□□□□ -0.41
VPS28-215ENST00000531924 NUDT2P50583 147 aa12.47□□□□□ -0.41
VPS28-215ENST00000531924 CDK5R2Q13319 367 aa12.47□□□□□ -0.41
VPS28-215ENST00000531924 AQP6Q13520 282 aa12.47□□□□□ -0.41
VPS28-215ENST00000531924 KRR1Q13601 381 aaKnown RBP12.47□□□□□ -0.41
VPS28-215ENST00000531924 KRT72Q14CN4 511 aa12.47□□□□□ -0.41
VPS28-215ENST00000531924 MESTQ5EB52 335 aa12.47□□□□□ -0.41
VPS28-215ENST00000531924 TMEM255AQ5JRV8 349 aa12.47□□□□□ -0.41
VPS28-215ENST00000531924 GPR139Q6DWJ6 353 aa12.47□□□□□ -0.41
VPS28-215ENST00000531924 GLB1L2Q8IW92 636 aa12.47□□□□□ -0.41
VPS28-215ENST00000531924 FAM156AQ8NDB6 213 aa12.47□□□□□ -0.41
VPS28-215ENST00000531924 OR5L1Q8NGL2 311 aa12.47□□□□□ -0.41
VPS28-215ENST00000531924 FAM46AQ96IP4 442 aaKnown RBP12.47□□□□□ -0.41
VPS28-215ENST00000531924 SLC6A7Q99884 636 aa12.47□□□□□ -0.41
VPS28-215ENST00000531924 TMEM106BQ9NUM4 274 aa12.47□□□□□ -0.41
VPS28-215ENST00000531924 GMPR2Q9P2T1 348 aaKnown RBP12.47□□□□□ -0.41
VPS28-215ENST00000531924 ENPP4Q9Y6X5 453 aa12.47□□□□□ -0.41
VPS28-215ENST00000531924 NME4O00746 187 aa12.46□□□□□ -0.41
VPS28-215ENST00000531924 PRSS23O95084 383 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms