RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 BBIP1A8MTZ0 92 aa17.77■□□□□ 0.44
SQSTM1-210ENST00000506042 DOK2O60496 412 aa17.77■□□□□ 0.44
SQSTM1-210ENST00000506042 TSPAN19P0C672 248 aa17.77■□□□□ 0.44
SQSTM1-210ENST00000506042 HTR5AP47898 357 aa17.77■□□□□ 0.44
SQSTM1-210ENST00000506042 RGS6P49758 472 aa17.77■□□□□ 0.44
SQSTM1-210ENST00000506042 PIN1Q13526 163 aaPredicted RBP17.77■□□□□ 0.44
SQSTM1-210ENST00000506042 SELPLGQ14242 412 aa17.77■□□□□ 0.44
SQSTM1-210ENST00000506042 LAPTM4AQ15012 233 aa17.77■□□□□ 0.44
SQSTM1-210ENST00000506042 COQ5Q5HYK3 327 aa17.77■□□□□ 0.44
SQSTM1-210ENST00000506042 NANOGP8Q6NSW7 305 aa17.77■□□□□ 0.44
SQSTM1-210ENST00000506042 NLRC3Q7RTR2 1065 aa17.77■□□□□ 0.44
SQSTM1-210ENST00000506042 OAFQ86UD1 273 aa17.77■□□□□ 0.44
SQSTM1-210ENST00000506042 C1orf87Q8N0U7 546 aa17.77■□□□□ 0.44
SQSTM1-210ENST00000506042 ZNF283Q8N7M2 679 aa17.77■□□□□ 0.44
SQSTM1-210ENST00000506042 DVL3Q92997 716 aaPredicted RBP17.77■□□□□ 0.44
SQSTM1-210ENST00000506042 PRRC1Q96M27 445 aa17.77■□□□□ 0.44
SQSTM1-210ENST00000506042 WNT5BQ9H1J7 359 aa17.77■□□□□ 0.44
SQSTM1-210ENST00000506042 ESM1Q9NQ30 184 aa17.77■□□□□ 0.44
SQSTM1-210ENST00000506042 C20orf141Q9NUB4 165 aa17.77■□□□□ 0.44
SQSTM1-210ENST00000506042 GID8Q9NWU2 228 aa17.77■□□□□ 0.44
SQSTM1-210ENST00000506042 EGFL7Q9UHF1 273 aa17.77■□□□□ 0.44
SQSTM1-210ENST00000506042 KLHL21Q9UJP4 597 aa17.77■□□□□ 0.44
SQSTM1-210ENST00000506042 AP3M1Q9Y2T2 418 aa17.77■□□□□ 0.44
SQSTM1-210ENST00000506042 DNAJC9-AS1A6NH13 148 aa17.76■□□□□ 0.43
SQSTM1-210ENST00000506042 A8MXK9 166 aa17.76■□□□□ 0.43
SQSTM1-210ENST00000506042 SGCEO43556 437 aa17.76■□□□□ 0.43
SQSTM1-210ENST00000506042 PPIAL4GP0DN37 164 aa17.76■□□□□ 0.43
SQSTM1-210ENST00000506042 ZNF12P17014 697 aa17.76■□□□□ 0.43
SQSTM1-210ENST00000506042 RPL4P36578 427 aaKnown RBP17.76■□□□□ 0.43
SQSTM1-210ENST00000506042 LRRC23Q53EV4 343 aaPredicted RBP17.76■□□□□ 0.43
SQSTM1-210ENST00000506042 ZNF774Q6NX45 483 aa17.76■□□□□ 0.43
SQSTM1-210ENST00000506042 LRRN1Q6UXK5 716 aa17.76■□□□□ 0.43
SQSTM1-210ENST00000506042 LRRC28Q86X40 367 aaPredicted RBP17.76■□□□□ 0.43
SQSTM1-210ENST00000506042 NMD3Q96D46 503 aaKnown RBP17.76■□□□□ 0.43
SQSTM1-210ENST00000506042 TPD52L3Q96J77 140 aa17.76■□□□□ 0.43
SQSTM1-210ENST00000506042 FNDC11Q9BVV2 318 aa17.76■□□□□ 0.43
SQSTM1-210ENST00000506042 INSIG2Q9Y5U4 225 aa17.76■□□□□ 0.43
SQSTM1-210ENST00000506042 CLDN34H7C241 214 aa17.75■□□□□ 0.43
SQSTM1-210ENST00000506042 RNASE1P07998 156 aaKnown RBP17.75■□□□□ 0.43
SQSTM1-210ENST00000506042 KITLGP21583 273 aa17.75■□□□□ 0.43
SQSTM1-210ENST00000506042 SLC6A9P48067 706 aa17.75■□□□□ 0.43
SQSTM1-210ENST00000506042 SRP9P49458 86 aaKnown RBP17.75■□□□□ 0.43
SQSTM1-210ENST00000506042 PSG7Q13046 419 aa17.75■□□□□ 0.43
SQSTM1-210ENST00000506042 BEND6Q5SZJ8 279 aaPredicted RBP17.75■□□□□ 0.43
SQSTM1-210ENST00000506042 FOXL2NBQ6ZUU3 175 aa17.75■□□□□ 0.43
SQSTM1-210ENST00000506042 RNF113BQ8IZP6 322 aaKnown RBP17.75■□□□□ 0.43
SQSTM1-210ENST00000506042 DEFB108BQ8NET1 73 aa17.75■□□□□ 0.43
SQSTM1-210ENST00000506042 OR52E2Q8NGJ4 325 aa17.75■□□□□ 0.43
SQSTM1-210ENST00000506042 PTP4A1Q93096 173 aa17.75■□□□□ 0.43
SQSTM1-210ENST00000506042 LRRC58Q96CX6 371 aa17.75■□□□□ 0.43
SQSTM1-210ENST00000506042 MIOXQ9UGB7 285 aa17.75■□□□□ 0.43
SQSTM1-210ENST00000506042 WNK2Q9Y3S1 2297 aa17.75■□□□□ 0.43
SQSTM1-210ENST00000506042 A0A0G2JND7 137 aa17.74■□□□□ 0.43
SQSTM1-210ENST00000506042 A0A1B0GUS0 222 aa17.74■□□□□ 0.43
SQSTM1-210ENST00000506042 EFCAB9A8MZ26 197 aa17.74■□□□□ 0.43
SQSTM1-210ENST00000506042 HMGB1P1B2RPK0 211 aaPredicted RBP17.74■□□□□ 0.43
SQSTM1-210ENST00000506042 NGFP01138 241 aa17.74■□□□□ 0.43
SQSTM1-210ENST00000506042 IFNW1P05000 195 aa17.74■□□□□ 0.43
SQSTM1-210ENST00000506042 CRYBA1P05813 215 aa17.74■□□□□ 0.43
SQSTM1-210ENST00000506042 IRF2P14316 349 aa17.74■□□□□ 0.43
SQSTM1-210ENST00000506042 RPS2P15880 293 aaKnown RBP17.74■□□□□ 0.43
SQSTM1-210ENST00000506042 GNB2P62879 340 aa17.74■□□□□ 0.43
SQSTM1-210ENST00000506042 AQP6Q13520 282 aa17.74■□□□□ 0.43
SQSTM1-210ENST00000506042 TRAM2Q15035 370 aa17.74■□□□□ 0.43
SQSTM1-210ENST00000506042 ATG16L2Q8NAA4 619 aa17.74■□□□□ 0.43
SQSTM1-210ENST00000506042 SSBP3Q9BWW4 388 aaPredicted RBP17.74■□□□□ 0.43
SQSTM1-210ENST00000506042 NPHS2Q9NP85 383 aa17.74■□□□□ 0.43
SQSTM1-210ENST00000506042 POLE4Q9NR33 117 aa17.74■□□□□ 0.43
SQSTM1-210ENST00000506042 RAC2P15153 192 aa17.73■□□□□ 0.43
SQSTM1-210ENST00000506042 OR1E2P47887 323 aa17.73■□□□□ 0.43
SQSTM1-210ENST00000506042 BPIFB3P59826 476 aa17.73■□□□□ 0.43
SQSTM1-210ENST00000506042 CYBRD1Q53TN4 286 aa17.73■□□□□ 0.43
SQSTM1-210ENST00000506042 PGM2L1Q6PCE3 622 aa17.73■□□□□ 0.43
SQSTM1-210ENST00000506042 TSPYL5Q86VY4 417 aaPredicted RBP17.73■□□□□ 0.43
SQSTM1-210ENST00000506042 CYP4Z1Q86W10 505 aa17.73■□□□□ 0.43
SQSTM1-210ENST00000506042 OR13G1Q8NGZ3 307 aa17.73■□□□□ 0.43
SQSTM1-210ENST00000506042 RASD2Q96D21 266 aa17.73■□□□□ 0.43
SQSTM1-210ENST00000506042 OR2V2Q96R30 315 aa17.73■□□□□ 0.43
SQSTM1-210ENST00000506042 SLITRK2Q9H156 845 aa17.73■□□□□ 0.43
SQSTM1-210ENST00000506042 UNKLQ9H9P5 680 aaKnown RBP17.73■□□□□ 0.43
SQSTM1-210ENST00000506042 KRCC1Q9NPI7 259 aaPredicted RBP17.73■□□□□ 0.43
SQSTM1-210ENST00000506042 ZNF69Q9UC07 566 aa17.73■□□□□ 0.43
SQSTM1-210ENST00000506042 ATPIF1Q9UII2 106 aa17.73■□□□□ 0.43
SQSTM1-210ENST00000506042 TMEM5Q9Y2B1 443 aa17.73■□□□□ 0.43
SQSTM1-210ENST00000506042 POLR1DQ9Y2S0 133 aa17.73■□□□□ 0.43
SQSTM1-210ENST00000506042 MRASO14807 208 aa17.72■□□□□ 0.43
SQSTM1-210ENST00000506042 TROVE2P10155 538 aaKnown RBP eCLIP17.72■□□□□ 0.43
SQSTM1-210ENST00000506042 ZFP36P26651 326 aaKnown RBP17.72■□□□□ 0.43
SQSTM1-210ENST00000506042 TTMPQ5BVD1 217 aa17.72■□□□□ 0.43
SQSTM1-210ENST00000506042 ZNF362Q5T0B9 420 aaPredicted RBP17.72■□□□□ 0.43
SQSTM1-210ENST00000506042 TREML4Q6UXN2 200 aa17.72■□□□□ 0.43
SQSTM1-210ENST00000506042 ZNF730Q6ZMV8 503 aa17.72■□□□□ 0.43
SQSTM1-210ENST00000506042 ARPINQ7Z6K5 226 aa17.72■□□□□ 0.43
SQSTM1-210ENST00000506042 PARP8Q8N3A8 854 aa17.72■□□□□ 0.43
SQSTM1-210ENST00000506042 OR2T12Q8NG77 320 aa17.72■□□□□ 0.43
SQSTM1-210ENST00000506042 OR51A7Q8NH64 312 aa17.72■□□□□ 0.43
SQSTM1-210ENST00000506042 ITLN1Q8WWA0 313 aa17.72■□□□□ 0.43
SQSTM1-210ENST00000506042 HAVCR1Q96D42 359 aa17.72■□□□□ 0.43
SQSTM1-210ENST00000506042 CMBLQ96DG6 245 aa17.72■□□□□ 0.43
SQSTM1-210ENST00000506042 ZNF582Q96NG8 517 aaPredicted RBP17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms