RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 TUBG2Q9NRH3 451 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 CA10Q9NS85 328 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 NECAP2Q9NVZ3 263 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 NKIRAS2Q9NYR9 191 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 NINJ2Q9NZG7 142 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 CALML5Q9NZT1 146 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 TMEM181Q9P2C4 612 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 CHRNA9Q9UGM1 479 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 ZDHHC2Q9UIJ5 367 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 ZNF225Q9UK10 706 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 MOKQ9UQ07 419 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 VDAC3Q9Y277 283 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 CCL27Q9Y4X3 112 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 NPIPA5A0A0B4J1W7 369 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 EXOC1LA0A1B0GW35 172 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 ZNF716A6NP11 495 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 PRSS47A8MTI9 375 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 HNRNPCL2B2RXH8 293 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 B4DXG7 233 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 ZNF587BE7ETH6 402 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 NPIPA7E9PJI5 369 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 CLDN34H7C241 214 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 RIPK2O43353 540 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 ATP8B1O43520 1251 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 OR2T1O43869 369 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 SH3BGRLO75368 114 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 SEC22BO75396 215 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 PIAS1O75925 651 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 FSTL3O95633 263 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 NUDT14O95848 222 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 CSTAP01040 98 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 IGLV2-11P01706 119 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 HMGN2P05204 90 aaKnown RBP3.3□□□□□ -1.88
USP54-217ENST00000498213 GPIP06744 558 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 NPIPA8P0DM63 369 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 PPIAL4GP0DN37 164 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 MYL2P10916 166 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 ADRA2CP18825 462 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 ACHEP22303 614 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 PRTN3P24158 256 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 GCAP28676 217 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 CCT3P49368 545 aaKnown RBP3.3□□□□□ -1.88
USP54-217ENST00000498213 CDH13P55290 713 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 TPD52P55327 224 aaPredicted RBP3.3□□□□□ -1.88
USP54-217ENST00000498213 UBE2NP61088 152 aaKnown RBP3.3□□□□□ -1.88
USP54-217ENST00000498213 HPCAP84074 193 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 ZNF117Q03924 483 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 SLC3A1Q07837 685 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 FOXF1Q12946 379 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 STX5Q13190 355 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 SKP2Q13309 424 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 SLC17A1Q14916 467 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 QPRTQ15274 297 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 TAF9Q16594 264 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 DUSP5Q16690 384 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 ARHGAP11BQ3KRB8 267 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 RFTN2Q52LD8 501 aaPredicted RBP3.3□□□□□ -1.88
USP54-217ENST00000498213 UNC50Q53HI1 259 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 ESCO2Q56NI9 601 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 SGO1Q5FBB7 561 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 FBXO48Q5FWF7 155 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 DCST2Q5T1A1 773 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 ANXA8L1Q5VT79 327 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 PRAMEF8Q5VWM4 474 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 PRAMEF7Q5VXH5 474 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 FAM205BPQ63HN1 556 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 SAXO2Q658L1 398 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 ZYG11AQ6WRX3 759 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 RBMS3Q6XE24 437 aaKnown RBP3.3□□□□□ -1.88
USP54-217ENST00000498213 ADAMTSL5Q6ZMM2 481 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 MOB3CQ70IA8 216 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 ANKRD46Q86W74 232 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 UBE2J2Q8N2K1 259 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 RIBC1Q8N443 379 aaPredicted RBP3.3□□□□□ -1.88
USP54-217ENST00000498213 TRIML2Q8N7C3 387 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 SIGLECL1Q8N7X8 197 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 GJC3Q8NFK1 279 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 OR8J2Q8NGG1 315 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 OR51F2Q8NH61 342 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 UBLCP1Q8WVY7 318 aaPredicted RBP3.3□□□□□ -1.88
USP54-217ENST00000498213 TMIGD2Q96BF3 282 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 RAB39BQ96DA2 213 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 FAM120BQ96EK7 910 aaKnown RBP3.3□□□□□ -1.88
USP54-217ENST00000498213 PKNOX2Q96KN3 472 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 LRR1Q96L50 414 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 C3orf30Q96M34 536 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 SLC38A2Q96QD8 506 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 GPA33Q99795 319 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 CCDC106Q9BWC9 280 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 RSPO3Q9BXY4 272 aaPredicted RBP3.3□□□□□ -1.88
USP54-217ENST00000498213 SRXN1Q9BYN0 137 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 NUF2Q9BZD4 464 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 RTN4RQ9BZR6 473 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 VIPAS39Q9H9C1 493 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 MID1IP1Q9NPA3 183 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 FARSBQ9NSD9 589 aaKnown RBP3.3□□□□□ -1.88
USP54-217ENST00000498213 ZCCHC3Q9NUD5 404 aaKnown RBP3.3□□□□□ -1.88
USP54-217ENST00000498213 PSMC3IPQ9P2W1 217 aaPredicted RBP3.3□□□□□ -1.88
USP54-217ENST00000498213 TBK1Q9UHD2 729 aa3.3□□□□□ -1.88
USP54-217ENST00000498213 RASD1Q9Y272 281 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms