RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 Q6ZTK2 550 aa14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 FAM71CQ8NEG0 241 aa14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 OR4C16Q8NGL9 310 aa14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 SCMH1Q96GD3 660 aa14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 OR2A5Q96R48 311 aa14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 UFSP2Q9NUQ7 469 aa14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 GPATCH2Q9NW75 528 aa14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 SLC7A11Q9UPY5 501 aa14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 CACNA1EQ15878 2313 aa14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 C5orf67F2Z3F1 127 aa14.83□□□□□ -0.03
CCDC88B-209ENST00000494080 FABP1P07148 127 aa14.83□□□□□ -0.03
CCDC88B-209ENST00000494080 CSNK1A1P48729 337 aa14.83□□□□□ -0.03
CCDC88B-209ENST00000494080 P2RX1P51575 399 aa14.83□□□□□ -0.03
CCDC88B-209ENST00000494080 PCBP4P57723 403 aaKnown RBP14.83□□□□□ -0.03
CCDC88B-209ENST00000494080 MEP1BQ16820 701 aa14.83□□□□□ -0.03
CCDC88B-209ENST00000494080 COX15Q7KZN9 410 aa14.83□□□□□ -0.03
CCDC88B-209ENST00000494080 C8orf44Q96CB5 159 aa14.83□□□□□ -0.03
CCDC88B-209ENST00000494080 TSPAN10Q9H1Z9 355 aaPredicted RBP14.83□□□□□ -0.03
CCDC88B-209ENST00000494080 CER1O95813 267 aa14.83□□□□□ -0.04
CCDC88B-209ENST00000494080 IFNA2P01563 188 aa14.83□□□□□ -0.04
CCDC88B-209ENST00000494080 SULT1A3P0DMM9 295 aa14.83□□□□□ -0.04
CCDC88B-209ENST00000494080 SULT1A4P0DMN0 295 aa14.83□□□□□ -0.04
CCDC88B-209ENST00000494080 GLYATL3Q5SZD4 288 aa14.83□□□□□ -0.04
CCDC88B-209ENST00000494080 LRRTM1Q86UE6 522 aa14.83□□□□□ -0.04
CCDC88B-209ENST00000494080 SLC41A2Q96JW4 573 aa14.83□□□□□ -0.04
CCDC88B-209ENST00000494080 SLC5A7Q9GZV3 580 aa14.83□□□□□ -0.04
CCDC88B-209ENST00000494080 LUZP4Q9P127 313 aa14.83□□□□□ -0.04
CCDC88B-209ENST00000494080 TMEM212A6NML5 194 aa14.83□□□□□ -0.04
CCDC88B-209ENST00000494080 METTL12A8MUP2 240 aa14.83□□□□□ -0.04
CCDC88B-209ENST00000494080 DVL2O14641 736 aa14.83□□□□□ -0.04
CCDC88B-209ENST00000494080 HYAL3O43820 417 aaPredicted RBP14.83□□□□□ -0.04
CCDC88B-209ENST00000494080 EML2O95834 649 aa14.83□□□□□ -0.04
CCDC88B-209ENST00000494080 EIF2S3LQ2VIR3 472 aaKnown RBP14.83□□□□□ -0.04
CCDC88B-209ENST00000494080 AADACL4Q5VUY2 407 aa14.83□□□□□ -0.04
CCDC88B-209ENST00000494080 OR13C9Q8NGT0 318 aa14.83□□□□□ -0.04
CCDC88B-209ENST00000494080 A0A087WV62 115 aa14.83□□□□□ -0.04
CCDC88B-209ENST00000494080 SERTM1A2A2V5 107 aa14.83□□□□□ -0.04
CCDC88B-209ENST00000494080 K7EPK0 472 aa14.83□□□□□ -0.04
CCDC88B-209ENST00000494080 CALCBP10092 127 aa14.83□□□□□ -0.04
CCDC88B-209ENST00000494080 EMDP50402 254 aa14.83□□□□□ -0.04
CCDC88B-209ENST00000494080 IDH3GP51553 393 aaPredicted RBP14.83□□□□□ -0.04
CCDC88B-209ENST00000494080 SGPP2Q8IWX5 399 aa14.83□□□□□ -0.04
CCDC88B-209ENST00000494080 FAM71E2Q8N5Q1 922 aa14.83□□□□□ -0.04
CCDC88B-209ENST00000494080 BVESQ8NE79 360 aa14.83□□□□□ -0.04
CCDC88B-209ENST00000494080 SP7Q8TDD2 431 aaPredicted RBP14.83□□□□□ -0.04
CCDC88B-209ENST00000494080 ALOX12BO75342 701 aa14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 CRTAPO75718 401 aaPredicted RBP14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 RAB13P51153 203 aa14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 PCBP3P57721 371 aaKnown RBP14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 PLA2G7Q13093 441 aa14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 KIAA0141Q14154 515 aaPredicted RBP14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 STK17BO94768 372 aa14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 CSF2RBP32927 897 aa14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 PLA1AQ53H76 456 aa14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 TMEM244Q5VVB8 128 aa14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 LPCAT3Q6P1A2 487 aa14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 SYT13Q7L8C5 426 aa14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 PCDHB10Q9UN67 800 aa14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 B3GALT1Q9Y5Z6 326 aa14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 IGHG1P01857 330 aa14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 OR4E1P0C645 316 aa14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 CHATP28329 748 aa14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 GNRHRP30968 328 aa14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 AKR1C3P42330 323 aa14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 MAGEB1P43366 347 aa14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 MEOX2P50222 304 aa14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 KIRREL2Q6UWL6 708 aa14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 HSD17B13Q7Z5P4 300 aaPredicted RBP14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 OR11A1Q9GZK7 315 aa14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 CCDC86Q9H6F5 360 aaKnown RBP14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 SIRT3Q9NTG7 399 aaPredicted RBP14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 FBXO34Q9NWN3 711 aa14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 CFDP00746 253 aaPredicted RBP14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 BIDP55957 195 aa14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 FZD2Q14332 565 aa14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 CORO6Q6QEF8 472 aa14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 GABRG1Q8N1C3 465 aa14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 NT5CQ8TCD5 201 aa14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 PPP1R1CQ8WVI7 109 aa14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 EMC6Q9BV81 110 aa14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 SELENOIQ9C0D9 397 aa14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 IL20Q9NYY1 176 aa14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 CSAG2Q9Y5P2 127 aa14.82□□□□□ -0.04
CCDC88B-209ENST00000494080 CNOT1A5YKK6 2376 aaKnown RBP14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 A8MVM7 634 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 LMO7DNF2Z398 122 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 IFNA4P05014 189 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 GDF1P27539 372 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 KIR2DL1P43626 348 aaPredicted RBP14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 EPHA4P54764 986 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 SNRPEP62304 92 aaKnown RBP14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 FAM53BQ14153 422 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 SLC22A6Q4U2R8 563 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 GPR157Q5UAW9 335 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 SLC16A9Q7RTY1 509 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 CCDC54Q8NEL0 328 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 C17orf47Q8NEP4 570 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 MOKQ9UQ07 419 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 GIMAP1-GIMAP5A0A087WTJ2 511 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 IFNA10P01566 189 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms