RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 TCRBP04435 133 aa18.78■□□□□ 0.6
CCDC88B-208ENST00000492980 CD2P06729 351 aa18.78■□□□□ 0.6
CCDC88B-208ENST00000492980 CD63P08962 238 aa18.78■□□□□ 0.6
CCDC88B-208ENST00000492980 ZNF43P17038 809 aa18.78■□□□□ 0.6
CCDC88B-208ENST00000492980 IGFBP3P17936 291 aaPredicted RBP18.78■□□□□ 0.6
CCDC88B-208ENST00000492980 FSTP19883 344 aa18.78■□□□□ 0.6
CCDC88B-208ENST00000492980 OTX2P32243 289 aa18.78■□□□□ 0.6
CCDC88B-208ENST00000492980 TAS2R20P59543 309 aa18.78■□□□□ 0.6
CCDC88B-208ENST00000492980 RRAS2P62070 204 aaPredicted RBP18.78■□□□□ 0.6
CCDC88B-208ENST00000492980 CARD17Q5XLA6 110 aa18.78■□□□□ 0.6
CCDC88B-208ENST00000492980 C6orf15Q6UXA7 325 aaPredicted RBP18.78■□□□□ 0.6
CCDC88B-208ENST00000492980 OR1J4Q8NGS1 313 aa18.78■□□□□ 0.6
CCDC88B-208ENST00000492980 CT55Q8WUE5 264 aa18.78■□□□□ 0.6
CCDC88B-208ENST00000492980 OR2B2Q9GZK3 357 aa18.78■□□□□ 0.6
CCDC88B-208ENST00000492980 TAS2R4Q9NYW5 299 aa18.78■□□□□ 0.6
CCDC88B-208ENST00000492980 RBMX2Q9Y388 322 aaKnown RBP18.78■□□□□ 0.6
CCDC88B-208ENST00000492980 TRAV6A0A075B6T7 132 aa18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 LOC101059948A0A1B0GTJ6 334 aa18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 EIF1AXP47813 144 aaKnown RBP18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 MFAP5Q13361 173 aa18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 SNTB2Q13425 540 aaKnown RBP18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 CCDC157Q569K6 752 aa18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 BCL2L15Q5TBC7 163 aa18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 FAM166AQ6J272 317 aa18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 SLC25A47Q6Q0C1 308 aa18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 HIST2H2ABQ8IUE6 130 aaPredicted RBP18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 OR51D1Q8NGF3 324 aa18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 OR10S1Q8NGN2 331 aa18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 RNF170Q96K19 258 aa18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 CACNG6Q9BXT2 260 aa18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 COPZ2Q9P299 210 aa18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 SLC17A2O00624 439 aa18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 ZIC3O60481 467 aa18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 TCN2P20062 427 aa18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 MMP16P51512 607 aa18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 CCR6P51684 374 aa18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 MRPS10P82664 201 aaKnown RBP18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 Q0VFX4 171 aa18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 RAB11BQ15907 218 aa18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 ZNF704Q6ZNC4 412 aaPredicted RBP18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 NCCRP1Q6ZVX7 275 aaPredicted RBP18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 TCTE3Q8IZS6 198 aa18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 OR13C3Q8NGS6 347 aa18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 FCAMRQ8WWV6 532 aa18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 JSRP1Q96MG2 331 aaPredicted RBP18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 STRADBQ9C0K7 418 aa18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 C1orf198Q9H425 327 aa18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 MCUBQ9NWR8 336 aa18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 FAM206AQ9NX38 181 aa18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 MRPL15Q9P015 296 aaKnown RBP18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 CKLFQ9UBR5 152 aa18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 RCE1Q9Y256 329 aa18.77■□□□□ 0.6
CCDC88B-208ENST00000492980 A0A0A6YYJ9 748 aa18.76■□□□□ 0.59
CCDC88B-208ENST00000492980 GLSO94925 669 aaPredicted RBP18.76■□□□□ 0.59
CCDC88B-208ENST00000492980 PTHLHP12272 177 aa18.76■□□□□ 0.59
CCDC88B-208ENST00000492980 HIST3H3Q16695 136 aa18.76■□□□□ 0.59
CCDC88B-208ENST00000492980 RAET1LQ5VY80 246 aa18.76■□□□□ 0.59
CCDC88B-208ENST00000492980 TIGD3Q6B0B8 471 aa18.76■□□□□ 0.59
CCDC88B-208ENST00000492980 RAB11FIP2Q7L804 512 aa18.76■□□□□ 0.59
CCDC88B-208ENST00000492980 PLPP7Q8NBV4 271 aa18.76■□□□□ 0.59
CCDC88B-208ENST00000492980 CAPSLQ8WWF8 208 aa18.76■□□□□ 0.59
CCDC88B-208ENST00000492980 AKAP1Q92667 903 aaKnown RBP eCLIP18.76■□□□□ 0.59
CCDC88B-208ENST00000492980 EMC7Q9NPA0 242 aa18.76■□□□□ 0.59
CCDC88B-208ENST00000492980 DKKL1Q9UK85 242 aa18.76■□□□□ 0.59
CCDC88B-208ENST00000492980 LHFPL6Q9Y693 200 aa18.76■□□□□ 0.59
CCDC88B-208ENST00000492980 MED12Q93074 2177 aa18.76■□□□□ 0.59
CCDC88B-208ENST00000492980 OR2M5A3KFT3 312 aa18.76■□□□□ 0.59
CCDC88B-208ENST00000492980 TPPPO94811 219 aa18.76■□□□□ 0.59
CCDC88B-208ENST00000492980 DHFRP00374 187 aa18.76■□□□□ 0.59
CCDC88B-208ENST00000492980 POU3F4P49335 361 aa18.76■□□□□ 0.59
CCDC88B-208ENST00000492980 EFNB2P52799 333 aa18.76■□□□□ 0.59
CCDC88B-208ENST00000492980 H3F3AP84243 136 aa18.76■□□□□ 0.59
CCDC88B-208ENST00000492980 IFITM2Q01629 132 aa18.76■□□□□ 0.59
CCDC88B-208ENST00000492980 CHAF1BQ13112 559 aa18.76■□□□□ 0.59
CCDC88B-208ENST00000492980 CFAP77Q6ZQR2 320 aa18.76■□□□□ 0.59
CCDC88B-208ENST00000492980 C15orf40Q8WUR7 153 aa18.76■□□□□ 0.59
CCDC88B-208ENST00000492980 SCMH1Q96GD3 660 aa18.76■□□□□ 0.59
CCDC88B-208ENST00000492980 TMEM41AQ96HV5 264 aa18.76■□□□□ 0.59
CCDC88B-208ENST00000492980 ZPBPQ9BS86 351 aa18.76■□□□□ 0.59
CCDC88B-208ENST00000492980 TP63Q9H3D4 680 aaPredicted RBP18.76■□□□□ 0.59
CCDC88B-208ENST00000492980 SEC61A2Q9H9S3 476 aa18.76■□□□□ 0.59
CCDC88B-208ENST00000492980 PHF3Q92576 2039 aaKnown RBP18.75■□□□□ 0.59
CCDC88B-208ENST00000492980 C7orf66A4D0T2 115 aa18.75■□□□□ 0.59
CCDC88B-208ENST00000492980 ECDO95905 644 aaPredicted RBP18.75■□□□□ 0.59
CCDC88B-208ENST00000492980 UBCP0CG48 685 aaKnown RBP18.75■□□□□ 0.59
CCDC88B-208ENST00000492980 CDAP32320 146 aa18.75■□□□□ 0.59
CCDC88B-208ENST00000492980 CLDN6P56747 220 aa18.75■□□□□ 0.59
CCDC88B-208ENST00000492980 ANGPT1Q15389 498 aa18.75■□□□□ 0.59
CCDC88B-208ENST00000492980 TMEM244Q5VVB8 128 aa18.75■□□□□ 0.59
CCDC88B-208ENST00000492980 FAM3DQ96BQ1 224 aa18.75■□□□□ 0.59
CCDC88B-208ENST00000492980 TAAR9Q96RI9 348 aa18.75■□□□□ 0.59
CCDC88B-208ENST00000492980 KCNK15Q9H427 330 aa18.75■□□□□ 0.59
CCDC88B-208ENST00000492980 HRASLSQ9HDD0 168 aa18.75■□□□□ 0.59
CCDC88B-208ENST00000492980 KLK11Q9UBX7 282 aa18.75■□□□□ 0.59
CCDC88B-208ENST00000492980 GDF2Q9UK05 429 aaPredicted RBP18.75■□□□□ 0.59
CCDC88B-208ENST00000492980 PCSK5Q92824 1860 aa18.75■□□□□ 0.59
CCDC88B-208ENST00000492980 ZNF726A6NNF4 738 aa18.74■□□□□ 0.59
CCDC88B-208ENST00000492980 ACOT7O00154 380 aa18.74■□□□□ 0.59
CCDC88B-208ENST00000492980 P2RY10O00398 339 aa18.74■□□□□ 0.59
CCDC88B-208ENST00000492980 XRCC3O43542 346 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms