RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 MMP16P51512 607 aa11.68□□□□□ -0.54
VARS-227ENST00000489979 ARL9Q6T311 187 aa11.68□□□□□ -0.54
VARS-227ENST00000489979 KLBQ86Z14 1044 aa11.68□□□□□ -0.54
VARS-227ENST00000489979 C1QL4Q86Z23 238 aa11.68□□□□□ -0.54
VARS-227ENST00000489979 C11orf65Q8NCR3 313 aa11.68□□□□□ -0.54
VARS-227ENST00000489979 PFN4Q8NHR9 129 aa11.68□□□□□ -0.54
VARS-227ENST00000489979 UBE2FQ969M7 185 aa11.68□□□□□ -0.54
VARS-227ENST00000489979 DACT3Q96B18 629 aaPredicted RBP11.68□□□□□ -0.54
VARS-227ENST00000489979 OR2V2Q96R30 315 aa11.68□□□□□ -0.54
VARS-227ENST00000489979 RBM4BQ9BQ04 359 aaKnown RBP11.68□□□□□ -0.54
VARS-227ENST00000489979 CPPED1Q9BRF8 314 aaPredicted RBP11.68□□□□□ -0.54
VARS-227ENST00000489979 CCDC167Q9P0B6 97 aa11.68□□□□□ -0.54
VARS-227ENST00000489979 ZNF281Q9Y2X9 895 aa11.68□□□□□ -0.54
VARS-227ENST00000489979 TMEM120BA0PK00 339 aa11.67□□□□□ -0.54
VARS-227ENST00000489979 SURF4O15260 269 aa11.67□□□□□ -0.54
VARS-227ENST00000489979 MT-ND1P03886 318 aa11.67□□□□□ -0.54
VARS-227ENST00000489979 THRBP10828 461 aa11.67□□□□□ -0.54
VARS-227ENST00000489979 CD247P20963 164 aa11.67□□□□□ -0.54
VARS-227ENST00000489979 KITLGP21583 273 aa11.67□□□□□ -0.54
VARS-227ENST00000489979 PCBD1P61457 104 aa11.67□□□□□ -0.54
VARS-227ENST00000489979 GNB2P62879 340 aa11.67□□□□□ -0.54
VARS-227ENST00000489979 HIST2H2BDQ6DRA6 164 aa11.67□□□□□ -0.54
VARS-227ENST00000489979 ASPHD2Q6ICH7 369 aa11.67□□□□□ -0.54
VARS-227ENST00000489979 EPGNQ6UW88 154 aa11.67□□□□□ -0.54
VARS-227ENST00000489979 CLDN22Q8N7P3 220 aa11.67□□□□□ -0.54
VARS-227ENST00000489979 CMBLQ96DG6 245 aa11.67□□□□□ -0.54
VARS-227ENST00000489979 SGTBQ96EQ0 304 aa11.67□□□□□ -0.54
VARS-227ENST00000489979 CHIAQ9BZP6 476 aa11.67□□□□□ -0.54
VARS-227ENST00000489979 PCDHAC1Q9H158 963 aa11.67□□□□□ -0.54
VARS-227ENST00000489979 TMEM165Q9HC07 324 aa11.67□□□□□ -0.54
VARS-227ENST00000489979 GCM1Q9NP62 436 aa11.67□□□□□ -0.54
VARS-227ENST00000489979 C20orf141Q9NUB4 165 aa11.67□□□□□ -0.54
VARS-227ENST00000489979 MIOXQ9UGB7 285 aa11.67□□□□□ -0.54
VARS-227ENST00000489979 USH1CQ9Y6N9 552 aa11.67□□□□□ -0.54
VARS-227ENST00000489979 KIR2DS1A0A191URI9 304 aa11.66□□□□□ -0.54
VARS-227ENST00000489979 GMNCA6NCL1 334 aa11.66□□□□□ -0.54
VARS-227ENST00000489979 CYB5R3P00387 301 aaPredicted RBP11.66□□□□□ -0.54
VARS-227ENST00000489979 NR2C1P13056 603 aa11.66□□□□□ -0.54
VARS-227ENST00000489979 SELEP16581 610 aa11.66□□□□□ -0.54
VARS-227ENST00000489979 CPT2P23786 658 aa11.66□□□□□ -0.54
VARS-227ENST00000489979 ERFP50548 548 aa11.66□□□□□ -0.54
VARS-227ENST00000489979 TOP3AQ13472 1001 aaPredicted RBP11.66□□□□□ -0.54
VARS-227ENST00000489979 LAPTM4AQ15012 233 aa11.66□□□□□ -0.54
VARS-227ENST00000489979 CYP51A1Q16850 503 aa11.66□□□□□ -0.54
VARS-227ENST00000489979 RUNDC3AQ59EK9 446 aa11.66□□□□□ -0.54
VARS-227ENST00000489979 FAM205BPQ63HN1 556 aa11.66□□□□□ -0.54
VARS-227ENST00000489979 SLC27A4Q6P1M0 643 aa11.66□□□□□ -0.54
VARS-227ENST00000489979 DLEU7Q6UYE1 221 aa11.66□□□□□ -0.54
VARS-227ENST00000489979 Q6YL49 198 aa11.66□□□□□ -0.54
VARS-227ENST00000489979 NKAIN4Q8IVV8 208 aa11.66□□□□□ -0.54
VARS-227ENST00000489979 NPEPL1Q8NDH3 523 aa11.66□□□□□ -0.54
VARS-227ENST00000489979 ZNF420Q8TAQ5 688 aaPredicted RBP11.66□□□□□ -0.54
VARS-227ENST00000489979 TMEM255BQ8WV15 326 aa11.66□□□□□ -0.54
VARS-227ENST00000489979 TAMM41Q96BW9 452 aa11.66□□□□□ -0.54
VARS-227ENST00000489979 PLEKHA8Q96JA3 519 aa11.66□□□□□ -0.54
VARS-227ENST00000489979 RBP7Q96R05 134 aa11.66□□□□□ -0.54
VARS-227ENST00000489979 NUDT16L1Q9BRJ7 211 aaKnown RBP11.66□□□□□ -0.54
VARS-227ENST00000489979 ALG12Q9BV10 488 aa11.66□□□□□ -0.54
VARS-227ENST00000489979 TXNIPQ9H3M7 391 aa11.66□□□□□ -0.54
VARS-227ENST00000489979 NOX4Q9NPH5 578 aa11.66□□□□□ -0.54
VARS-227ENST00000489979 TBCCD1Q9NVR7 557 aa11.66□□□□□ -0.54
VARS-227ENST00000489979 NDRG4Q9ULP0 352 aaKnown RBP11.66□□□□□ -0.54
VARS-227ENST00000489979 A0A1W2PPL8 197 aa11.65□□□□□ -0.54
VARS-227ENST00000489979 NPIPB13A6NJU9 1138 aa11.65□□□□□ -0.54
VARS-227ENST00000489979 NPIPB4C9JG80 1138 aa11.65□□□□□ -0.54
VARS-227ENST00000489979 POLR3GO15318 223 aaPredicted RBP11.65□□□□□ -0.54
VARS-227ENST00000489979 ERLIN1O75477 346 aa11.65□□□□□ -0.54
VARS-227ENST00000489979 VIMP08670 466 aaKnown RBP11.65□□□□□ -0.54
VARS-227ENST00000489979 TSPAN19P0C672 248 aa11.65□□□□□ -0.54
VARS-227ENST00000489979 TUBG1P23258 451 aa11.65□□□□□ -0.54
VARS-227ENST00000489979 GUCA1AP43080 201 aaPredicted RBP11.65□□□□□ -0.54
VARS-227ENST00000489979 SELPLGQ14242 412 aa11.65□□□□□ -0.54
VARS-227ENST00000489979 ENDOGQ14249 297 aaKnown RBP11.65□□□□□ -0.54
VARS-227ENST00000489979 GPR157Q5UAW9 335 aa11.65□□□□□ -0.54
VARS-227ENST00000489979 RUSC1-AS1Q66K80 236 aa11.65□□□□□ -0.54
VARS-227ENST00000489979 WDR93Q6P2C0 686 aa11.65□□□□□ -0.54
VARS-227ENST00000489979 FOXL2NBQ6ZUU3 175 aa11.65□□□□□ -0.54
VARS-227ENST00000489979 OR5AS1Q8N127 324 aa11.65□□□□□ -0.54
VARS-227ENST00000489979 FITM2Q8N6M3 262 aa11.65□□□□□ -0.54
VARS-227ENST00000489979 ATG16L2Q8NAA4 619 aa11.65□□□□□ -0.54
VARS-227ENST00000489979 HAVCR1Q96D42 359 aa11.65□□□□□ -0.54
VARS-227ENST00000489979 NEIL1Q96FI4 390 aaPredicted RBP11.65□□□□□ -0.54
VARS-227ENST00000489979 SLC30A2Q9BRI3 323 aa11.65□□□□□ -0.54
VARS-227ENST00000489979 TMEM246Q9BRR3 403 aa11.65□□□□□ -0.54
VARS-227ENST00000489979 TUBG2Q9NRH3 451 aa11.65□□□□□ -0.54
VARS-227ENST00000489979 STARD10Q9Y365 291 aa11.65□□□□□ -0.54
VARS-227ENST00000489979 RNF114Q9Y508 228 aa11.65□□□□□ -0.54
VARS-227ENST00000489979 IFNL4K9M1U5 179 aa11.64□□□□□ -0.55
VARS-227ENST00000489979 SCG5P05408 212 aa11.64□□□□□ -0.55
VARS-227ENST00000489979 MELTFP08582 738 aa11.64□□□□□ -0.55
VARS-227ENST00000489979 MSR1P21757 451 aa11.64□□□□□ -0.55
VARS-227ENST00000489979 RBM34P42696 430 aaKnown RBP11.64□□□□□ -0.55
VARS-227ENST00000489979 HTR5AP47898 357 aa11.64□□□□□ -0.55
VARS-227ENST00000489979 PITPNBP48739 271 aa11.64□□□□□ -0.55
VARS-227ENST00000489979 MTPNP58546 118 aa11.64□□□□□ -0.55
VARS-227ENST00000489979 BPIFB3P59826 476 aa11.64□□□□□ -0.55
VARS-227ENST00000489979 FGF12P61328 243 aa11.64□□□□□ -0.55
VARS-227ENST00000489979 HLXQ14774 488 aaPredicted RBP11.64□□□□□ -0.55
VARS-227ENST00000489979 TAF9Q16594 264 aa11.64□□□□□ -0.55
VARS-227ENST00000489979 AGKQ53H12 422 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms