RNA–Protein interactions for RNA: ENST00000485055.5

CCDC39-205, Transcript of coiled-coil domain containing 39, humanhuman

TSL 1 (best)

Gene CCDC39, Length 2,874 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-205ENST00000485055 EGR3Q06889 387 aa4.67□□□□□ -1.66
CCDC39-205ENST00000485055 PDIA2Q13087 525 aaKnown RBP4.67□□□□□ -1.66
CCDC39-205ENST00000485055 TRIP13Q15645 432 aaPredicted RBP4.67□□□□□ -1.66
CCDC39-205ENST00000485055 GABRA6Q16445 453 aa4.67□□□□□ -1.66
CCDC39-205ENST00000485055 SFT2D3Q587I9 215 aa4.67□□□□□ -1.66
CCDC39-205ENST00000485055 SPPL2CQ8IUH8 684 aa4.67□□□□□ -1.66
CCDC39-205ENST00000485055 CRLF3Q8IUI8 442 aa4.67□□□□□ -1.66
CCDC39-205ENST00000485055 KIRREL3Q8IZU9 778 aa4.67□□□□□ -1.66
CCDC39-205ENST00000485055 CDRT4Q8N9R6 151 aa4.67□□□□□ -1.66
CCDC39-205ENST00000485055 PYROXD1Q8WU10 500 aa4.67□□□□□ -1.66
CCDC39-205ENST00000485055 ANKRD9Q96BM1 317 aaPredicted RBP4.67□□□□□ -1.66
CCDC39-205ENST00000485055 HRASLS5Q96KN8 279 aa4.67□□□□□ -1.66
CCDC39-205ENST00000485055 CAPZA3Q96KX2 299 aa4.67□□□□□ -1.66
CCDC39-205ENST00000485055 FCRL1Q96LA6 429 aa4.67□□□□□ -1.66
CCDC39-205ENST00000485055 ZNF75AQ96N20 296 aa4.67□□□□□ -1.66
CCDC39-205ENST00000485055 NICN1Q9BSH3 213 aa4.67□□□□□ -1.66
CCDC39-205ENST00000485055 NAA50Q9GZZ1 169 aaKnown RBP4.67□□□□□ -1.66
CCDC39-205ENST00000485055 LRRC4CQ9HCJ2 640 aa4.67□□□□□ -1.66
CCDC39-205ENST00000485055 ACKR4Q9NPB9 350 aa4.67□□□□□ -1.66
CCDC39-205ENST00000485055 PRPF19Q9UMS4 504 aaKnown RBP4.67□□□□□ -1.66
CCDC39-205ENST00000485055 PPP1R3CQ9UQK1 317 aa4.67□□□□□ -1.66
CCDC39-205ENST00000485055 UTP11Q9Y3A2 253 aaKnown RBP4.67□□□□□ -1.66
CCDC39-205ENST00000485055 C4orf51C9J302 202 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 NPIPB6E9PJ23 425 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 TFECO14948 347 aaPredicted RBP4.66□□□□□ -1.66
CCDC39-205ENST00000485055 NUPL2O15504 423 aaKnown RBP4.66□□□□□ -1.66
CCDC39-205ENST00000485055 CLOCKO15516 846 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 EMC8O43402 210 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 OR10H3O60404 316 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 GATBO75879 557 aaKnown RBP4.66□□□□□ -1.66
CCDC39-205ENST00000485055 TGFB1P01137 390 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 CLPSP04118 112 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 DBHP09172 617 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 RBP1P09455 135 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 PET100P0DJ07 73 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 SLC2A1P11166 492 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 PRF1P14222 555 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 CD96P40200 585 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 LIM2P55344 173 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 SNRPNP63162 240 aaKnown RBP4.66□□□□□ -1.66
CCDC39-205ENST00000485055 SLC18A2Q05940 514 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 FLOT2Q14254 428 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 MELKQ14680 651 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 ZNF791Q3KP31 576 aaPredicted RBP4.66□□□□□ -1.66
CCDC39-205ENST00000485055 BICRALQ6AI39 1079 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 TMEM217Q8N7C4 229 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 NOA1Q8NC60 698 aaKnown RBP4.66□□□□□ -1.66
CCDC39-205ENST00000485055 FAM98AQ8NCA5 519 aaKnown RBP4.66□□□□□ -1.66
CCDC39-205ENST00000485055 GJC3Q8NFK1 279 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 OR5T2Q8NGG2 359 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 ITLN2Q8WWU7 325 aaPredicted RBP4.66□□□□□ -1.66
CCDC39-205ENST00000485055 AKAP1Q92667 903 aaKnown RBP eCLIP4.66□□□□□ -1.66
CCDC39-205ENST00000485055 ZIM3Q96PE6 472 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 SPNS1Q9H2V7 528 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 ZBTB20Q9HC78 741 aaPredicted RBP4.66□□□□□ -1.66
CCDC39-205ENST00000485055 ZNF446Q9NWS9 450 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 CD274Q9NZQ7 290 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP4.66□□□□□ -1.66
CCDC39-205ENST00000485055 ASB4Q9Y574 426 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 ASPMQ8IZT6 3477 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 CCT8L1PA6NM43 557 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 CDC7O00311 574 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 ADAM10O14672 748 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 SSX4O60224 188 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 FCN3O75636 299 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 IFNA5P01569 189 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 HOXB9P17482 250 aaPredicted RBP4.66□□□□□ -1.66
CCDC39-205ENST00000485055 ATP5A1P25705 553 aaKnown RBP4.66□□□□□ -1.66
CCDC39-205ENST00000485055 EPHA2P29317 976 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 HMOX2P30519 316 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 PHBP35232 272 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 RBM34P42696 430 aaKnown RBP4.66□□□□□ -1.66
CCDC39-205ENST00000485055 SLCO1A2P46721 670 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 RGS6P49758 472 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 GNG11P61952 73 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 OR4D1Q15615 310 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 GTDC1Q4AE62 458 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 TECRLQ5HYJ1 363 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 C1QL3Q5VWW1 255 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 HIST2H2AA3Q6FI13 130 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 ZNF621Q6ZSS3 439 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 SH2D5Q6ZV89 423 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 MDGA2Q7Z553 956 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 RPS19BP1Q86WX3 136 aaKnown RBP4.66□□□□□ -1.66
CCDC39-205ENST00000485055 OR5L2Q8NGL0 311 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 FAM57AQ8TBR7 257 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 ZNF675Q8TD23 568 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 ZNF721Q8TF20 911 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 PYCR2Q96C36 320 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 L3HYPDHQ96EM0 354 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 VSTM2LQ96N03 204 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 SERPINI1Q99574 410 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 HOPXQ9BPY8 73 aaPredicted RBP4.66□□□□□ -1.66
CCDC39-205ENST00000485055 G6PC3Q9BUM1 346 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 KAT8Q9H7Z6 458 aaKnown RBP4.66□□□□□ -1.66
CCDC39-205ENST00000485055 CYSLTR2Q9NS75 346 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 NTMQ9P121 344 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 PYCARDQ9ULZ3 195 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 NCKAP5O14513 1909 aa4.66□□□□□ -1.66
CCDC39-205ENST00000485055 H0YL77 283 aa4.65□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 120.8 ms