RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 HDHD2Q9H0R4 259 aa8.93□□□□□ -0.98
USP39-215ENST00000481409 C12orf49Q9H741 205 aa8.93□□□□□ -0.98
USP39-215ENST00000481409 SP140LQ9H930 580 aa8.93□□□□□ -0.98
USP39-215ENST00000481409 DDX28Q9NUL7 540 aaKnown RBP8.93□□□□□ -0.98
USP39-215ENST00000481409 GALNT8Q9NY28 637 aa8.93□□□□□ -0.98
USP39-215ENST00000481409 LHFPL6Q9Y693 200 aa8.93□□□□□ -0.98
USP39-215ENST00000481409 TRGV8A0A0C4DH27 118 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 ZNF701M0R085 212 aaPredicted RBP8.92□□□□□ -0.98
USP39-215ENST00000481409 CCRL2O00421 344 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 SEC14L2O76054 403 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 APOL3O95236 402 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 MPZL1O95297 269 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 CPEP16870 476 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 PSMB1P20618 241 aaKnown RBP8.92□□□□□ -0.98
USP39-215ENST00000481409 HOXC12P31275 282 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 CDAP32320 146 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 MMP16P51512 607 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 CCR9P51686 369 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 RIDAP52758 137 aaKnown RBP8.92□□□□□ -0.98
USP39-215ENST00000481409 SIRPAP78324 504 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 ARF1P84077 181 aaKnown RBP8.92□□□□□ -0.98
USP39-215ENST00000481409 TPBGQ13641 420 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 ENDOGQ14249 297 aaKnown RBP8.92□□□□□ -0.98
USP39-215ENST00000481409 ZNF829Q3KNS6 432 aaPredicted RBP8.92□□□□□ -0.98
USP39-215ENST00000481409 TMEM53Q6P2H8 277 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 RPL22L1Q6P5R6 122 aaKnown RBP8.92□□□□□ -0.98
USP39-215ENST00000481409 KLHL24Q6TFL4 600 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 PLXDC2Q6UX71 529 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 GDPGP1Q6ZNW5 385 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.92□□□□□ -0.98
USP39-215ENST00000481409 BTLAQ7Z6A9 289 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 HIST2H2ABQ8IUE6 130 aaPredicted RBP8.92□□□□□ -0.98
USP39-215ENST00000481409 GABRG1Q8N1C3 465 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 FAM169BQ8N8A8 192 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 ZNF420Q8TAQ5 688 aaPredicted RBP8.92□□□□□ -0.98
USP39-215ENST00000481409 SPRYD4Q8WW59 207 aaPredicted RBP8.92□□□□□ -0.98
USP39-215ENST00000481409 UFD1Q92890 307 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 SLAMF6Q96DU3 332 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 LRRC46Q96FV0 321 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 C4orf36Q96KX1 117 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 TBX5Q99593 518 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 MOB1AQ9H8S9 216 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 ASH2LQ9UBL3 628 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 CLEC2DQ9UHP7 191 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 PRSS50Q9UI38 385 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 TINAGQ9UJW2 476 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 GDF2Q9UK05 429 aaPredicted RBP8.92□□□□□ -0.98
USP39-215ENST00000481409 COPS3Q9UNS2 423 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 LAMA5O15230 3695 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 ZGRF1Q86YA3 2104 aa8.92□□□□□ -0.98
USP39-215ENST00000481409 SVILO95425 2214 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 SHANK1Q9Y566 2161 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 A0A0G2JNJ9 132 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 CIB4A0PJX0 185 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 OR6C6A6NF89 314 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 A8MXE2 369 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 J3QLW9 94 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 OGG1O15527 345 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 SGCEO43556 437 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 PLPP2O43688 288 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 GPRIN2O60269 458 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 ABHD16AO95870 558 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 WNT11O96014 354 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 LCKP06239 509 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 ITGA5P08648 1049 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 H2BFMP0C1H6 154 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 B4GALT1P15291 398 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 ZNF19P17023 458 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 AGAP20933 346 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 IGHV1-2P23083 117 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 PSMB9P28065 219 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 OPRL1P41146 370 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 MAP2K4P45985 399 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 FOXF2Q12947 444 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 RAB39AQ14964 217 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 RAB35Q15286 201 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 MEP1BQ16820 701 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 SLC25A35Q3KQZ1 300 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 C3orf36Q3SXR2 165 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 ARMCX4Q5H9R4 360 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 ELFN2Q5R3F8 820 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 SFRP5Q5T4F7 317 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 OR2G6Q5TZ20 316 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 VWA1Q6PCB0 445 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 LYPD4Q6UWN0 246 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 MS4A15Q8N5U1 240 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 ZNF433Q8N7K0 673 aaPredicted RBP8.91□□□□□ -0.98
USP39-215ENST00000481409 YIPF7Q8N8F6 280 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 ZNF610Q8N9Z0 462 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 NAXEQ8NCW5 288 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 RPS4Y2Q8TD47 263 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 BCL2L2Q92843 193 aaPredicted RBP8.91□□□□□ -0.98
USP39-215ENST00000481409 SPTSSAQ969W0 71 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 ZNF837Q96EG3 531 aaPredicted RBP8.91□□□□□ -0.98
USP39-215ENST00000481409 PELI1Q96FA3 418 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 DCLRE1CQ96SD1 692 aaKnown RBP8.91□□□□□ -0.98
USP39-215ENST00000481409 ATF6BQ99941 703 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 COQ3Q9NZJ6 369 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 JKAMPQ9P055 326 aa8.91□□□□□ -0.98
USP39-215ENST00000481409 Q9UFV3 132 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms