RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 SDR42E1Q8WUS8 393 aa3.31□□□□□ -1.88
VPS13D-207ENST00000476169 SLC25A38Q96DW6 304 aa3.31□□□□□ -1.88
VPS13D-207ENST00000476169 DUS3LQ96G46 650 aaKnown RBP3.31□□□□□ -1.88
VPS13D-207ENST00000476169 ZNF514Q96K75 400 aaPredicted RBP3.31□□□□□ -1.88
VPS13D-207ENST00000476169 DNAJC1Q96KC8 554 aaKnown RBP3.31□□□□□ -1.88
VPS13D-207ENST00000476169 OR5M11Q96RB7 305 aa3.31□□□□□ -1.88
VPS13D-207ENST00000476169 CTRCQ99895 268 aa3.31□□□□□ -1.88
VPS13D-207ENST00000476169 FOXC2Q99958 501 aa3.31□□□□□ -1.88
VPS13D-207ENST00000476169 COPS4Q9BT78 406 aa3.31□□□□□ -1.88
VPS13D-207ENST00000476169 RNF126Q9BV68 326 aa3.31□□□□□ -1.88
VPS13D-207ENST00000476169 BARHL1Q9BZE3 327 aa3.31□□□□□ -1.88
VPS13D-207ENST00000476169 ZBP1Q9H171 429 aa3.31□□□□□ -1.88
VPS13D-207ENST00000476169 SYT4Q9H2B2 425 aa3.31□□□□□ -1.88
VPS13D-207ENST00000476169 NXF3Q9H4D5 531 aaKnown RBP3.31□□□□□ -1.88
VPS13D-207ENST00000476169 NECAP2Q9NVZ3 263 aa3.31□□□□□ -1.88
VPS13D-207ENST00000476169 DPM3Q9P2X0 92 aa3.31□□□□□ -1.88
VPS13D-207ENST00000476169 ASIC3Q9UHC3 531 aa3.31□□□□□ -1.88
VPS13D-207ENST00000476169 PSMD13Q9UNM6 376 aa3.31□□□□□ -1.88
VPS13D-207ENST00000476169 URGCP-MRPS24S4R325 110 aa3.31□□□□□ -1.88
VPS13D-207ENST00000476169 RIMS1Q86UR5 1692 aaKnown RBP3.3□□□□□ -1.88
VPS13D-207ENST00000476169 VWDEQ8N2E2 1590 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 UGGT1Q9NYU2 1555 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 LMTK2Q8IWU2 1503 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 HFM1A2PYH4 1435 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 MSH6P52701 1360 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 TRAV9-2A0A087WT02 112 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 KIR2DL5BA0A0G2JN68 375 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 KIR2DL5BA0A0G2JPC4 375 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 TVP23AA6NH52 213 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 EDIL3O43854 480 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 ICOSLGO75144 302 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 GJB5O95377 273 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 LDOC1O95751 146 aaPredicted RBP3.3□□□□□ -1.88
VPS13D-207ENST00000476169 TBX6O95947 436 aaPredicted RBP3.3□□□□□ -1.88
VPS13D-207ENST00000476169 STSP08842 583 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 OCMP0CE72 109 aaPredicted RBP3.3□□□□□ -1.88
VPS13D-207ENST00000476169 CSNK2A2P19784 350 aaPredicted RBP3.3□□□□□ -1.88
VPS13D-207ENST00000476169 BTDP43251 543 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 PAFAH1B2P68402 229 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 CSNK1G2P78368 415 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 SLC35B1P78383 322 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 SLC25A11Q02978 314 aaKnown RBP3.3□□□□□ -1.88
VPS13D-207ENST00000476169 ZNF92Q03936 586 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 TGIF1Q15583 401 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 C5orf47Q569G3 176 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 RNLSQ5VYX0 342 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 LINC00336Q6ZUF6 198 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 SSX6Q7RTT6 188 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 TMEM150AQ86TG1 271 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 PPP1R27Q86WC6 154 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 KIR2DL5AQ8N109 375 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 ZNF614Q8N883 585 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 OR6T1Q8NGN1 323 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 OR6K2Q8NGY2 324 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 KIR2DL5BQ8NHK3 375 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 C17orf50Q8WW18 174 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 DNASE2BQ8WZ79 361 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 OR8D1Q8WZ84 308 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 RPEQ96AT9 228 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 SERPINB11Q96P15 392 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 SERPINB12Q96P63 405 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 SCGB3A2Q96PL1 93 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 SELENOIQ9C0D9 397 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 SCRT2Q9NQ03 307 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 EXD2Q9NVH0 621 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 RBAKQ9NYW8 714 aaPredicted RBP3.3□□□□□ -1.88
VPS13D-207ENST00000476169 SENP1Q9P0U3 644 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 MUTYHQ9UIF7 546 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 KLHL21Q9UJP4 597 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 HYOU1Q9Y4L1 999 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 SUPT6HQ7KZ85 1726 aaKnown RBP3.3□□□□□ -1.88
VPS13D-207ENST00000476169 LTBP4Q8N2S1 1624 aa3.3□□□□□ -1.88
VPS13D-207ENST00000476169 NLRP1Q9C000 1473 aa3.29□□□□□ -1.88
VPS13D-207ENST00000476169 ARHGAP23Q9P227 1491 aa3.29□□□□□ -1.88
VPS13D-207ENST00000476169 ZFYVE9O95405 1425 aa3.29□□□□□ -1.88
VPS13D-207ENST00000476169 SBNO1A3KN83 1393 aa3.29□□□□□ -1.88
VPS13D-207ENST00000476169 BRD4O60885 1362 aaPredicted RBP3.29□□□□□ -1.88
VPS13D-207ENST00000476169 RAB3GAP2Q9H2M9 1393 aa3.29□□□□□ -1.88
VPS13D-207ENST00000476169 SEC14L6B5MCN3 397 aa3.29□□□□□ -1.88
VPS13D-207ENST00000476169 RNASEK-C17orf49H0YIS7 233 aa3.29□□□□□ -1.88
VPS13D-207ENST00000476169 SMKR1H3BMG3 65 aa3.29□□□□□ -1.88
VPS13D-207ENST00000476169 RAD51CO43502 376 aa3.29□□□□□ -1.88
VPS13D-207ENST00000476169 DPM1O60762 260 aa3.29□□□□□ -1.88
VPS13D-207ENST00000476169 TBL1XO60907 577 aa3.29□□□□□ -1.88
VPS13D-207ENST00000476169 TNFAIP8O95379 198 aa3.29□□□□□ -1.88
VPS13D-207ENST00000476169 TRIM49P0CI25 452 aa3.29□□□□□ -1.88
VPS13D-207ENST00000476169 TRIM49CP0CI26 452 aa3.29□□□□□ -1.88
VPS13D-207ENST00000476169 GLP1RP43220 463 aa3.29□□□□□ -1.88
VPS13D-207ENST00000476169 VDAC2P45880 294 aaPredicted RBP3.29□□□□□ -1.88
VPS13D-207ENST00000476169 GPR6P46095 362 aaPredicted RBP3.29□□□□□ -1.88
VPS13D-207ENST00000476169 CSNK1DP48730 415 aa3.29□□□□□ -1.88
VPS13D-207ENST00000476169 MRPS15P82914 257 aaKnown RBP3.29□□□□□ -1.88
VPS13D-207ENST00000476169 CD300CQ08708 224 aa3.29□□□□□ -1.88
VPS13D-207ENST00000476169 CD47Q08722 323 aa3.29□□□□□ -1.88
VPS13D-207ENST00000476169 TFDP2Q14188 446 aa3.29□□□□□ -1.88
VPS13D-207ENST00000476169 ATP6AP1Q15904 470 aa3.29□□□□□ -1.88
VPS13D-207ENST00000476169 C5orf64Q2M2E5 130 aa3.29□□□□□ -1.88
VPS13D-207ENST00000476169 QRICH1Q2TAL8 776 aa3.29□□□□□ -1.88
VPS13D-207ENST00000476169 KRTAP24-1Q3LI83 254 aa3.29□□□□□ -1.88
VPS13D-207ENST00000476169 KLF17Q5JT82 389 aaPredicted RBP3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms