RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 LINGO2Q7L985 606 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 NUFIP2Q7Z417 695 aaKnown RBP4.16□□□□□ -1.74
SF3B1-208ENST00000470268 CPOQ8IVL8 374 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 SLC43A2Q8N370 569 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 ZNF843Q8N446 348 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 TCEANCQ8N8B7 351 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 SYT14Q8NB59 555 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 SLC37A3Q8NCC5 494 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 BBS1Q8NFJ9 593 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 RHOXF1Q8NHV9 184 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 MBD3L2Q8NHZ7 208 aaPredicted RBP4.16□□□□□ -1.74
SF3B1-208ENST00000470268 INTS12Q96CB8 462 aaKnown RBP4.16□□□□□ -1.74
SF3B1-208ENST00000470268 OR2M2Q96R28 347 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 TTYH2Q9BSA4 534 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 DCUN1D5Q9BTE7 237 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 PRRG4Q9BZD6 226 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 FAM192AQ9GZU8 254 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 SYT4Q9H2B2 425 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 CALHM2Q9HA72 323 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 KLHL9Q9P2J3 617 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 GRHPRQ9UBQ7 328 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 ENOPH1Q9UHY7 261 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 DNAJC13O75165 2243 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 KMT2BQ9UMN6 2715 aaPredicted RBP4.16□□□□□ -1.74
SF3B1-208ENST00000470268 SMIM31A0A1B0GVY4 71 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 SLC22A23A1A5C7 686 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 PRSS37A4D1T9 235 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 ZNF724A8MTY0 619 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 IDH3BO43837 385 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 SS18L1O75177 396 aaPredicted RBP4.16□□□□□ -1.74
SF3B1-208ENST00000470268 UPK3AO75631 287 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 GPANK1O95872 356 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 IGHV3-9P01782 118 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 MT-ND2P03891 347 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 HMGN1P05114 100 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 YES1P07947 543 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 CTLA4P16410 223 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 MALP21145 153 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 PCMT1P22061 227 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 CEACAM8P31997 349 aaPredicted RBP4.16□□□□□ -1.74
SF3B1-208ENST00000470268 TIMP3P35625 211 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 FOXG1P55316 489 aaPredicted RBP4.16□□□□□ -1.74
SF3B1-208ENST00000470268 CDC42P60953 191 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 LSM3P62310 102 aaKnown RBP4.16□□□□□ -1.74
SF3B1-208ENST00000470268 RAB1AP62820 205 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 NKX6-1P78426 367 aaPredicted RBP4.16□□□□□ -1.74
SF3B1-208ENST00000470268 EMX1Q04741 257 aaPredicted RBP4.16□□□□□ -1.74
SF3B1-208ENST00000470268 ITGADQ13349 1161 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 RIN1Q13671 783 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 C1DQ13901 141 aaKnown RBP4.16□□□□□ -1.74
SF3B1-208ENST00000470268 RNPS1Q15287 305 aaKnown RBP4.16□□□□□ -1.74
SF3B1-208ENST00000470268 HIST3H3Q16695 136 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 EIF2S3LQ2VIR3 472 aaKnown RBP4.16□□□□□ -1.74
SF3B1-208ENST00000470268 TSPO2Q5TGU0 170 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 AADACL4Q5VUY2 407 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 OTPQ5XKR4 325 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 CARD17Q5XLA6 110 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 GPR139Q6DWJ6 353 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 NIPAL3Q6P499 406 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 PLBD1Q6P4A8 553 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 LEG1Q6P5S2 330 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 CASP12Q6UXS9 341 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 B3GNT6Q6ZMB0 384 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 P4HA3Q7Z4N8 544 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 OR6V1Q8N148 313 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 OR51L1Q8NGJ5 315 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 OR8J1Q8NGP2 316 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 OR9Q1Q8NGQ5 310 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 OR6X1Q8NH79 312 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 HTRA1Q92743 480 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 TMEM45BQ96B21 275 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 ISOC1Q96CN7 298 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 DGCR14Q96DF8 476 aaKnown RBP4.16□□□□□ -1.74
SF3B1-208ENST00000470268 SLC25A44Q96H78 314 aaPredicted RBP4.16□□□□□ -1.74
SF3B1-208ENST00000470268 GMPPAQ96IJ6 420 aaPredicted RBP4.16□□□□□ -1.74
SF3B1-208ENST00000470268 LRR1Q96L50 414 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 FOXN4Q96NZ1 517 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 NMNAT2Q9BZQ4 307 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 NUAK2Q9H093 628 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 TP63Q9H3D4 680 aaPredicted RBP4.16□□□□□ -1.74
SF3B1-208ENST00000470268 RPRD1BQ9NQG5 326 aaKnown RBP4.16□□□□□ -1.74
SF3B1-208ENST00000470268 ASB6Q9NWX5 421 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 DNAJC27Q9NZQ0 273 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 BAIAP2Q9UQB8 552 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 OSGIN2Q9Y236 505 aa4.16□□□□□ -1.74
SF3B1-208ENST00000470268 NOSIPQ9Y314 301 aaKnown RBP4.16□□□□□ -1.74
SF3B1-208ENST00000470268 IGLV1-36A0A0B4J1U3 117 aa4.15□□□□□ -1.75
SF3B1-208ENST00000470268 TRGV8A0A0C4DH27 118 aa4.15□□□□□ -1.75
SF3B1-208ENST00000470268 A0A1W2PPW3 197 aa4.15□□□□□ -1.75
SF3B1-208ENST00000470268 H3BMQ9 156 aa4.15□□□□□ -1.75
SF3B1-208ENST00000470268 FAM20BO75063 409 aa4.15□□□□□ -1.75
SF3B1-208ENST00000470268 ENTPD6O75354 484 aa4.15□□□□□ -1.75
SF3B1-208ENST00000470268 CGAP01215 116 aa4.15□□□□□ -1.75
SF3B1-208ENST00000470268 LCKP06239 509 aa4.15□□□□□ -1.75
SF3B1-208ENST00000470268 STSP08842 583 aa4.15□□□□□ -1.75
SF3B1-208ENST00000470268 PSKH1P11801 424 aa4.15□□□□□ -1.75
SF3B1-208ENST00000470268 FCGR2AP12318 317 aa4.15□□□□□ -1.75
SF3B1-208ENST00000470268 SPI1P17947 270 aa4.15□□□□□ -1.75
SF3B1-208ENST00000470268 SLC2A5P22732 501 aa4.15□□□□□ -1.75
SF3B1-208ENST00000470268 PTGER4P35408 488 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms