RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 UBE2E3Q969T4 207 aa4.12□□□□□ -1.75
CCDC88A-210ENST00000468534 EXOSC8Q96B26 276 aaKnown RBP4.12□□□□□ -1.75
CCDC88A-210ENST00000468534 TAMM41Q96BW9 452 aa4.12□□□□□ -1.75
CCDC88A-210ENST00000468534 CCDC126Q96EE4 140 aa4.12□□□□□ -1.75
CCDC88A-210ENST00000468534 PDXPQ96GD0 296 aa4.12□□□□□ -1.75
CCDC88A-210ENST00000468534 IL17FQ96PD4 163 aa4.12□□□□□ -1.75
CCDC88A-210ENST00000468534 PFDN5Q99471 154 aa4.12□□□□□ -1.75
CCDC88A-210ENST00000468534 CDCA4Q9BXL8 241 aa4.12□□□□□ -1.75
CCDC88A-210ENST00000468534 NPFFR1Q9GZQ6 430 aa4.12□□□□□ -1.75
CCDC88A-210ENST00000468534 ARL6Q9H0F7 186 aa4.12□□□□□ -1.75
CCDC88A-210ENST00000468534 SDCBP2Q9H190 292 aa4.12□□□□□ -1.75
CCDC88A-210ENST00000468534 NXF5Q9H1B4 397 aaKnown RBP4.12□□□□□ -1.75
CCDC88A-210ENST00000468534 SEMA6AQ9H2E6 1030 aa4.12□□□□□ -1.75
CCDC88A-210ENST00000468534 ARMC7Q9H6L4 198 aa4.12□□□□□ -1.75
CCDC88A-210ENST00000468534 ZNF665Q9H7R5 613 aa4.12□□□□□ -1.75
CCDC88A-210ENST00000468534 BEX1Q9HBH7 125 aa4.12□□□□□ -1.75
CCDC88A-210ENST00000468534 TMBIM4Q9HC24 238 aa4.12□□□□□ -1.75
CCDC88A-210ENST00000468534 RETNQ9HD89 108 aa4.12□□□□□ -1.75
CCDC88A-210ENST00000468534 GDF3Q9NR23 364 aa4.12□□□□□ -1.75
CCDC88A-210ENST00000468534 PURGQ9UJV8 347 aaKnown RBP4.12□□□□□ -1.75
CCDC88A-210ENST00000468534 POMT2Q9UKY4 750 aa4.12□□□□□ -1.75
CCDC88A-210ENST00000468534 RCL1Q9Y2P8 373 aaKnown RBP4.12□□□□□ -1.75
CCDC88A-210ENST00000468534 KDM5BQ9UGL1 1544 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 AK9Q5TCS8 1911 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 IGLV5-37A0A075B6J1 123 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 GLYATL1P3A0A0U1RQE8 302 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 EFCAB7A8K855 629 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 DVL1O14640 695 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 EPHB6O15197 1021 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 MPZL2O60487 215 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 RP2O75695 350 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 ATP5LO75964 103 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 KRT33AO76009 404 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 CNIH1O95406 144 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 C1orf105O95561 183 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 PCCAP05165 728 aaPredicted RBP4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 TACSTD2P09758 323 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 HIST1H1EP10412 219 aaKnown RBP4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 MGMTP16455 207 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 F8A1P23610 371 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 ERP29P30040 261 aaKnown RBP4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 HTR1FP30939 366 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 TALDO1P37837 337 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 CEACAM6P40199 344 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 PMELP40967 661 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 CLDN17P56750 224 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 OR10A3P58181 314 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 TAS2R39P59534 338 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 SLC35B1P78383 322 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 SKP2Q13309 424 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 KLF5Q13887 457 aaPredicted RBP4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 RAB6CQ53S08 254 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 SPIN4Q56A73 249 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 FGD3Q5JSP0 725 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 STPG1Q5TH74 334 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 OR4A47Q6IF82 309 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 CASP12Q6UXS9 341 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 SLC25A48Q6ZT89 311 aaKnown RBP4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 SLC36A1Q7Z2H8 476 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 FAM220AQ7Z4H9 259 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 COX8CQ7Z4L0 72 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 METTL13Q8N6R0 699 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 TEX45Q8NA69 505 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 OR10K1Q8NGX5 313 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 STOML3Q8TAV4 291 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 C11orf40Q8WZ69 217 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 TAAR8Q969N4 342 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 TBRG4Q969Z0 631 aaKnown RBP eCLIP4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 RERGQ96A58 199 aaPredicted RBP4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 SMIM19Q96E16 107 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 SMIM12Q96EX1 92 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 HBEGFQ99075 208 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 PHB2Q99623 299 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 RAB6CQ9H0N0 254 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 TMEM138Q9NPI0 162 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 COA4Q9NYJ1 87 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 FLRT3Q9NZU0 649 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 GSKIPQ9P0R6 139 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 TCF19Q9Y242 345 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 SNX24Q9Y343 169 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 AK6Q9Y3D8 172 aaKnown RBP4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 COLEC10Q9Y6Z7 277 aa4.11□□□□□ -1.75
CCDC88A-210ENST00000468534 KIR2DS1A0A191URI9 304 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 HSFX4A0A1B0GTS1 333 aaPredicted RBP4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 A0A1B0GU03 582 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 HSFX3A0A1B0GWH4 333 aaPredicted RBP4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 SMIM9A6NGZ8 99 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 PP2D1A8MPX8 630 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 RNF212BA8MTL3 300 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 ZNF732B4DXR9 585 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 SLC1A7O00341 560 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 BHLHE40O14503 412 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 PFDN6O15212 129 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 SLC22A1O15245 554 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 SPINT2O43291 252 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 ALOX12BO75342 701 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 NDUFB4O95168 129 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 RAB36O95755 333 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 IFNGP01579 166 aa4.1□□□□□ -1.75
CCDC88A-210ENST00000468534 IGHG4P01861 327 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms