RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 OPN4Q9UHM6 478 aa13.02□□□□□ -0.33
SKA3-204ENST00000462482 KLHL21Q9UJP4 597 aa13.02□□□□□ -0.33
SKA3-204ENST00000462482 AUP1Q9Y679 476 aa13.02□□□□□ -0.33
SKA3-204ENST00000462482 TRAV27A0A087WT01 109 aa13.01□□□□□ -0.33
SKA3-204ENST00000462482 LOC100653049A0A140TA62 436 aa13.01□□□□□ -0.33
SKA3-204ENST00000462482 ELOVL7A1L3X0 281 aa13.01□□□□□ -0.33
SKA3-204ENST00000462482 FXYD1O00168 92 aa13.01□□□□□ -0.33
SKA3-204ENST00000462482 DOK2O60496 412 aa13.01□□□□□ -0.33
SKA3-204ENST00000462482 KRT34O76011 436 aa13.01□□□□□ -0.33
SKA3-204ENST00000462482 UBA52P62987 128 aaKnown RBP13.01□□□□□ -0.33
SKA3-204ENST00000462482 PSG7Q13046 419 aa13.01□□□□□ -0.33
SKA3-204ENST00000462482 KLF10Q13118 480 aa13.01□□□□□ -0.33
SKA3-204ENST00000462482 CDK5R2Q13319 367 aa13.01□□□□□ -0.33
SKA3-204ENST00000462482 TMEM155Q4W5P6 130 aa13.01□□□□□ -0.33
SKA3-204ENST00000462482 AWAT1Q58HT5 328 aa13.01□□□□□ -0.33
SKA3-204ENST00000462482 ZNF730Q6ZMV8 503 aa13.01□□□□□ -0.33
SKA3-204ENST00000462482 FOXL2NBQ6ZUU3 175 aa13.01□□□□□ -0.33
SKA3-204ENST00000462482 RNF113BQ8IZP6 322 aaKnown RBP13.01□□□□□ -0.33
SKA3-204ENST00000462482 OFCC1Q8IZS5 231 aa13.01□□□□□ -0.33
SKA3-204ENST00000462482 CLDN22Q8N7P3 220 aa13.01□□□□□ -0.33
SKA3-204ENST00000462482 ZMAT3Q9HA38 289 aaKnown RBP13.01□□□□□ -0.33
SKA3-204ENST00000462482 POLE4Q9NR33 117 aa13.01□□□□□ -0.33
SKA3-204ENST00000462482 ARGLU1Q9NWB6 273 aaPredicted RBP13.01□□□□□ -0.33
SKA3-204ENST00000462482 EGFL7Q9UHF1 273 aa13.01□□□□□ -0.33
SKA3-204ENST00000462482 PURGQ9UJV8 347 aaKnown RBP13.01□□□□□ -0.33
SKA3-204ENST00000462482 A4GNTQ9UNA3 340 aa13.01□□□□□ -0.33
SKA3-204ENST00000462482 PPP1R3CQ9UQK1 317 aa13.01□□□□□ -0.33
SKA3-204ENST00000462482 PPIAL4AQ9Y536 164 aa13.01□□□□□ -0.33
SKA3-204ENST00000462482 GSTA4O15217 222 aa13□□□□□ -0.33
SKA3-204ENST00000462482 SGCEO43556 437 aa13□□□□□ -0.33
SKA3-204ENST00000462482 AHCYL1O43865 530 aa13□□□□□ -0.33
SKA3-204ENST00000462482 IGHV2-70P01814 119 aa13□□□□□ -0.33
SKA3-204ENST00000462482 EGR1P18146 543 aa13□□□□□ -0.33
SKA3-204ENST00000462482 YAP1P46937 504 aaKnown RBP13□□□□□ -0.33
SKA3-204ENST00000462482 PRKCDQ05655 676 aa13□□□□□ -0.33
SKA3-204ENST00000462482 ENDOGQ14249 297 aaKnown RBP13□□□□□ -0.33
SKA3-204ENST00000462482 ESCO2Q56NI9 601 aa13□□□□□ -0.33
SKA3-204ENST00000462482 SLC27A4Q6P1M0 643 aa13□□□□□ -0.33
SKA3-204ENST00000462482 ARPINQ7Z6K5 226 aa13□□□□□ -0.33
SKA3-204ENST00000462482 CYP4Z1Q86W10 505 aa13□□□□□ -0.33
SKA3-204ENST00000462482 MUC20Q8N307 709 aaPredicted RBP13□□□□□ -0.33
SKA3-204ENST00000462482 ZDHHC22Q8N966 263 aa13□□□□□ -0.33
SKA3-204ENST00000462482 PATZ1Q9HBE1 687 aaKnown RBP13□□□□□ -0.33
SKA3-204ENST00000462482 EMC7Q9NPA0 242 aa13□□□□□ -0.33
SKA3-204ENST00000462482 PLEK2Q9NYT0 353 aa13□□□□□ -0.33
SKA3-204ENST00000462482 RHCGQ9UBD6 479 aa13□□□□□ -0.33
SKA3-204ENST00000462482 OR5V1Q9UGF6 321 aa13□□□□□ -0.33
SKA3-204ENST00000462482 IL19Q9UHD0 177 aa13□□□□□ -0.33
SKA3-204ENST00000462482 NUP50Q9UKX7 468 aa13□□□□□ -0.33
SKA3-204ENST00000462482 H7C1C5 153 aa12.99□□□□□ -0.33
SKA3-204ENST00000462482 IFNL4K9M1U5 179 aa12.99□□□□□ -0.33
SKA3-204ENST00000462482 ZNF682O95780 498 aa12.99□□□□□ -0.33
SKA3-204ENST00000462482 FSHBP01225 129 aa12.99□□□□□ -0.33
SKA3-204ENST00000462482 CD14P08571 375 aa12.99□□□□□ -0.33
SKA3-204ENST00000462482 ZFP36P26651 326 aaKnown RBP12.99□□□□□ -0.33
SKA3-204ENST00000462482 BTG1P62324 171 aa12.99□□□□□ -0.33
SKA3-204ENST00000462482 LCN6P62502 163 aa12.99□□□□□ -0.33
SKA3-204ENST00000462482 GUCY1A3Q02108 690 aa12.99□□□□□ -0.33
SKA3-204ENST00000462482 ZNF154Q13106 437 aa12.99□□□□□ -0.33
SKA3-204ENST00000462482 TMEM255AQ5JRV8 349 aa12.99□□□□□ -0.33
SKA3-204ENST00000462482 C1orf94Q6P1W5 598 aa12.99□□□□□ -0.33
SKA3-204ENST00000462482 SHISA2Q6UWI4 295 aa12.99□□□□□ -0.33
SKA3-204ENST00000462482 FKBP9P1Q75LS8 142 aa12.99□□□□□ -0.33
SKA3-204ENST00000462482 SIGLECL1Q8N7X8 197 aa12.99□□□□□ -0.33
SKA3-204ENST00000462482 ATG16L2Q8NAA4 619 aa12.99□□□□□ -0.33
SKA3-204ENST00000462482 LRRC75AQ8NAA5 344 aa12.99□□□□□ -0.33
SKA3-204ENST00000462482 OR5L1Q8NGL2 311 aa12.99□□□□□ -0.33
SKA3-204ENST00000462482 OR13C2Q8NGS9 318 aa12.99□□□□□ -0.33
SKA3-204ENST00000462482 ACOT11Q8WXI4 607 aaPredicted RBP12.99□□□□□ -0.33
SKA3-204ENST00000462482 CMBLQ96DG6 245 aa12.99□□□□□ -0.33
SKA3-204ENST00000462482 ZNF570Q96NI8 536 aa12.99□□□□□ -0.33
SKA3-204ENST00000462482 RERGLQ9H628 205 aa12.99□□□□□ -0.33
SKA3-204ENST00000462482 VIPAS39Q9H9C1 493 aa12.99□□□□□ -0.33
SKA3-204ENST00000462482 ESM1Q9NQ30 184 aa12.99□□□□□ -0.33
SKA3-204ENST00000462482 TMEM5Q9Y2B1 443 aa12.99□□□□□ -0.33
SKA3-204ENST00000462482 CAPN7Q9Y6W3 813 aa12.99□□□□□ -0.33
SKA3-204ENST00000462482 KITLGP21583 273 aa12.98□□□□□ -0.33
SKA3-204ENST00000462482 MDH2P40926 338 aaKnown RBP12.98□□□□□ -0.33
SKA3-204ENST00000462482 RGS6P49758 472 aa12.98□□□□□ -0.33
SKA3-204ENST00000462482 BAMBIQ13145 260 aa12.98□□□□□ -0.33
SKA3-204ENST00000462482 AQP6Q13520 282 aa12.98□□□□□ -0.33
SKA3-204ENST00000462482 ZBED5Q49AG3 693 aa12.98□□□□□ -0.33
SKA3-204ENST00000462482 IFI44LQ53G44 452 aa12.98□□□□□ -0.33
SKA3-204ENST00000462482 MBOAT2Q6ZWT7 520 aa12.98□□□□□ -0.33
SKA3-204ENST00000462482 LRRC28Q86X40 367 aaPredicted RBP12.98□□□□□ -0.33
SKA3-204ENST00000462482 ZNF283Q8N7M2 679 aa12.98□□□□□ -0.33
SKA3-204ENST00000462482 DEFB108BQ8NET1 73 aa12.98□□□□□ -0.33
SKA3-204ENST00000462482 ITLN1Q8WWA0 313 aa12.98□□□□□ -0.33
SKA3-204ENST00000462482 DVL3Q92997 716 aaPredicted RBP12.98□□□□□ -0.33
SKA3-204ENST00000462482 PTP4A1Q93096 173 aa12.98□□□□□ -0.33
SKA3-204ENST00000462482 HAVCR1Q96D42 359 aa12.98□□□□□ -0.33
SKA3-204ENST00000462482 SAR1AQ9NR31 198 aa12.98□□□□□ -0.33
SKA3-204ENST00000462482 POLR1DQ9Y2S0 133 aa12.98□□□□□ -0.33
SKA3-204ENST00000462482 STARD10Q9Y365 291 aa12.98□□□□□ -0.33
SKA3-204ENST00000462482 PCDHGB1Q9Y5G3 927 aa12.98□□□□□ -0.33
SKA3-204ENST00000462482 PRSS37A4D1T9 235 aa12.97□□□□□ -0.33
SKA3-204ENST00000462482 J3QW42 95 aa12.97□□□□□ -0.33
SKA3-204ENST00000462482 KHDRBS3O75525 346 aaKnown RBP12.97□□□□□ -0.33
SKA3-204ENST00000462482 HKR1P10072 659 aa12.97□□□□□ -0.33
SKA3-204ENST00000462482 RAC2P15153 192 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms