RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 PLGLB1Q02325 96 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 TNK1Q13470 666 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 LINC00303Q3SY05 128 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 TRAPPC6BQ86SZ2 158 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 MISPQ8IVT2 679 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 TCTE3Q8IZS6 198 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 DUSP18Q8NEJ0 188 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 CSNK2A3Q8NEV1 391 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 OR1N1Q8NGS0 311 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 YIPF5Q969M3 257 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 TSPAN32Q96QS1 320 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 HIST1H2AAQ96QV6 131 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 NAA11Q9BSU3 229 aaPredicted RBP10.51□□□□□ -0.73
NPHP4-204ENST00000460696 HAO2Q9NYQ3 351 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 KLHL13Q9P2N7 655 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 ZFYVE26Q68DK2 2539 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 GPR171O14626 319 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 SP9P0CG40 484 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 SLC6A1P30531 599 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 RBMXP38159 391 aaKnown RBP10.51□□□□□ -0.73
NPHP4-204ENST00000460696 ACSM1Q08AH1 577 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 DYRK1AQ13627 763 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 ZNF546Q86UE3 836 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 PDZD9Q8IXQ8 264 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 OR52B4Q8NGK2 314 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 OR5H2Q8NGV7 314 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 NAT6Q93015 286 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 MIB2Q96AX9 1013 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 FASNP49327 2511 aaKnown RBP10.51□□□□□ -0.73
NPHP4-204ENST00000460696 PCNX1Q96RV3 2341 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 NUPL2O15504 423 aaKnown RBP10.5□□□□□ -0.73
NPHP4-204ENST00000460696 ALX3O95076 343 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 IFNA21P01568 189 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 CD3DP04234 171 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 CPEB4Q17RY0 729 aaKnown RBP eCLIP10.5□□□□□ -0.73
NPHP4-204ENST00000460696 SLC36A2Q495M3 483 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 WDR38Q5JTN6 314 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 TIGD3Q6B0B8 471 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 OR6M1Q8NGM8 313 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 OR10AC1Q8NH08 325 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 SFXN2Q96NB2 322 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 OR5V1Q9UGF6 321 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 OR2J2O76002 312 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 MPZL1O95297 269 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 FUT7Q11130 342 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 ANGPTL5Q86XS5 388 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 DND1Q8IYX4 353 aaKnown RBP10.5□□□□□ -0.73
NPHP4-204ENST00000460696 GPR137CQ8N3F9 429 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 STEAP2Q8NFT2 490 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 OTOSQ8NHW6 89 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 PHB2Q99623 299 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 TREM1Q9NP99 234 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 ASH2LQ9UBL3 628 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 MRM2Q9UI43 246 aaKnown RBP10.5□□□□□ -0.73
NPHP4-204ENST00000460696 HIF3AQ9Y2N7 669 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 MEMO1Q9Y316 297 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 NSG1A0A0A6YYJ2 146 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 GMDSO60547 372 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 FARS2O95363 451 aaKnown RBP10.5□□□□□ -0.73
NPHP4-204ENST00000460696 CRYZL1O95825 349 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 SERPINA2P20848 420 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 AGTR1P30556 359 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 SLC37A1P57057 533 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 EGR3Q06889 387 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 DOC2BQ14184 412 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 EBPQ15125 230 aaKnown RBP10.5□□□□□ -0.73
NPHP4-204ENST00000460696 C19orf48Q6RUI8 117 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 C5orf46Q6UWT4 87 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 C12orf4Q9NQ89 552 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 PTTG3PQ9NZH4 202 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 ABI3Q9P2A4 366 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 WRBO00258 174 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 OGG1O15527 345 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 PRH1P02810 166 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 CTLA4P16410 223 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 DPP4P27487 766 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 ZNF93P35789 620 aaPredicted RBP10.5□□□□□ -0.73
NPHP4-204ENST00000460696 CAPZA1P52907 286 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 AIMP2Q13155 320 aaKnown RBP10.5□□□□□ -0.73
NPHP4-204ENST00000460696 ST3GAL2Q16842 350 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 SPIN3Q5JUX0 258 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 TMEM81Q6P7N7 255 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 MDGA2Q7Z553 956 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 ATG4DQ86TL0 474 aaPredicted RBP10.5□□□□□ -0.73
NPHP4-204ENST00000460696 TOMM40LQ969M1 308 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 HAVCR1Q96D42 359 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 SCARF2Q96GP6 870 aaPredicted RBP10.5□□□□□ -0.73
NPHP4-204ENST00000460696 JAM3Q9BX67 310 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 ULBP2Q9BZM5 246 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 APMAPQ9HDC9 416 aa10.5□□□□□ -0.73
NPHP4-204ENST00000460696 FAM230AA0A1W2PPH8 454 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 ZNF850A8MQ14 1090 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 PTGS2P35354 604 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 CASRP41180 1078 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 CBX5P45973 191 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 PMPCAQ10713 525 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 FOXF1Q12946 379 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 CD200R1LQ6Q8B3 271 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 AGBL5Q8NDL9 886 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 OR52N5Q8NH56 324 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms