RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 RERGQ96A58 199 aaPredicted RBP4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 PINX1Q96BK5 328 aaKnown RBP4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 RPUSD4Q96CM3 377 aaKnown RBP4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 MOCOSQ96EN8 888 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 WDR34Q96EX3 536 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 ITCHQ96J02 903 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 Q96MT0 163 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 TBX5Q99593 518 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 SLC38A3Q99624 504 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 KCTD14Q9BQ13 255 aaPredicted RBP4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 BARHL1Q9BZE3 327 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 ATG10Q9H0Y0 220 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 FN3KQ9H479 309 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 SAP30LQ9HAJ7 183 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 PRSS16Q9NQE7 514 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 SLC9A2Q9UBY0 812 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 SS18L2Q9UHA2 77 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 ZNF230Q9UIE0 474 aaPredicted RBP4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 ADAM29Q9UKF5 820 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 EMCNQ9ULC0 261 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 PIGLQ9Y2B2 252 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 YIPF1Q9Y548 306 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 COL4A6Q14031 1691 aa4.3□□□□□ -1.72
CCDC88A-209ENST00000456975 SCN10AQ9Y5Y9 1956 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 TET1Q8NFU7 2136 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 TECTAO75443 2155 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 CPED1A4D0V7 1026 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 MYMKA6NI61 221 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 A6NNC1 897 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 M0QZ24 198 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 SLC37A4O43826 429 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 PRNPP04156 253 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 LGALS2P05162 132 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 PPIAL4GP0DN37 164 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 HLA-EP13747 358 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 MAKP20794 623 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 AZGP1P25311 298 aaKnown RBP4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 DEFA1P59665 94 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 DEFA3P59666 94 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 ERVPABLB-1P60509 514 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 GK3PQ14409 553 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 RSU1Q15404 277 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 CDKN3Q16667 212 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 HIST2H2ACQ16777 129 aaPredicted RBP4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 PRTGQ2VWP7 1150 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 ADPRMQ3LIE5 342 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 ITPRIPL2Q3MIP1 535 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 NXNL2Q5VZ03 156 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 TMEM211Q6ICI0 200 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 FAM198BQ6UWH4 519 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 FAM183BPQ6ZVS7 135 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 C5orf24Q7Z6I8 188 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 SCD5Q86SK9 330 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 SIAH3Q8IW03 269 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 LGI3Q8N145 548 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 TMEM251Q8N6I4 163 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 OR52L2PQ8NGH6 319 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 OR4P4Q8NGL7 312 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 OR5R1Q8NH85 324 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 MRAPQ8TCY5 172 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 MZB1Q8WU39 189 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 ORAOV1Q8WV07 137 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 TFGQ92734 400 aaPredicted RBP4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 CCDC126Q96EE4 140 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 DCUN1D1Q96GG9 259 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 AJUBAQ96IF1 538 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 LMLNQ96KR4 655 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 TGM7Q96PF1 710 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 SORT1Q99523 831 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 EPYCQ99645 322 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 TMEM121Q9BTD3 319 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 DPCDQ9BVM2 203 aaPredicted RBP4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 RAB34Q9BZG1 259 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 LHPPQ9H008 270 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 PPIL3Q9H2H8 161 aaKnown RBP4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 ALG9Q9H6U8 611 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 HEXA-AS1Q9H8Q6 139 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 RAB9BQ9NP90 201 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 FBXL12Q9NXK8 326 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 OR14J1Q9UGF5 321 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 STEAP1Q9UHE8 339 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 PLAGL1Q9UM63 463 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 SDR42E2A6NKP2 422 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 F5H5T6 163 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 AP4M1O00189 453 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 STBD1O95210 358 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 C8AP07357 584 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 CD37P11049 281 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 FCGR1AP12314 374 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 FCGR2AP12318 317 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 GPX2P18283 190 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 PMCHP20382 165 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 KLRC2P26717 231 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 FCGR2BP31994 310 aaPredicted RBP4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 CDK6Q00534 326 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 NME3Q13232 169 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 TPBGQ13641 420 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 EXOSC2Q13868 293 aaKnown RBP4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 IL13RA2Q14627 380 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 QPRTQ15274 297 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms