RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 PRAMEF20Q5VT98 475 aa12.71□□□□□ -0.37
LIMD1-202ENST00000440097 BAIAP2L2Q6UXY1 529 aa12.71□□□□□ -0.37
LIMD1-202ENST00000440097 NUP54Q7Z3B4 507 aa12.71□□□□□ -0.37
LIMD1-202ENST00000440097 FAM220AQ7Z4H9 259 aa12.71□□□□□ -0.37
LIMD1-202ENST00000440097 CMTM4Q8IZR5 234 aa12.71□□□□□ -0.37
LIMD1-202ENST00000440097 SYS1Q8N2H4 156 aa12.71□□□□□ -0.37
LIMD1-202ENST00000440097 OR52I2Q8NH67 350 aa12.71□□□□□ -0.37
LIMD1-202ENST00000440097 ARL5BQ96KC2 179 aa12.71□□□□□ -0.37
LIMD1-202ENST00000440097 SLC6A15Q9H2J7 730 aa12.71□□□□□ -0.37
LIMD1-202ENST00000440097 SAV1Q9H4B6 383 aaPredicted RBP12.71□□□□□ -0.37
LIMD1-202ENST00000440097 TMEM185BQ9H7F4 350 aa12.71□□□□□ -0.37
LIMD1-202ENST00000440097 NOX3Q9HBY0 568 aa12.71□□□□□ -0.37
LIMD1-202ENST00000440097 MOKQ9UQ07 419 aa12.71□□□□□ -0.37
LIMD1-202ENST00000440097 AK6Q9Y3D8 172 aaKnown RBP12.71□□□□□ -0.37
LIMD1-202ENST00000440097 ZNF175Q9Y473 711 aa12.71□□□□□ -0.37
LIMD1-202ENST00000440097 AHCTF1Q8WYP5 2266 aa12.71□□□□□ -0.37
LIMD1-202ENST00000440097 RALGAPA1Q6GYQ0 2036 aa12.71□□□□□ -0.37
LIMD1-202ENST00000440097 OR2M5A3KFT3 312 aa12.71□□□□□ -0.38
LIMD1-202ENST00000440097 DNASE2O00115 360 aaPredicted RBP12.71□□□□□ -0.38
LIMD1-202ENST00000440097 FLRT2O43155 660 aa12.71□□□□□ -0.38
LIMD1-202ENST00000440097 RAB3AP20336 220 aa12.71□□□□□ -0.38
LIMD1-202ENST00000440097 B2MP61769 119 aa12.71□□□□□ -0.38
LIMD1-202ENST00000440097 FOXF1Q12946 379 aa12.71□□□□□ -0.38
LIMD1-202ENST00000440097 INPP5JQ15735 1006 aaPredicted RBP12.71□□□□□ -0.38
LIMD1-202ENST00000440097 DMKNQ6E0U4 476 aaPredicted RBP12.71□□□□□ -0.38
LIMD1-202ENST00000440097 FAAP20Q6NZ36 180 aa12.71□□□□□ -0.38
LIMD1-202ENST00000440097 TMUB2Q71RG4 321 aa12.71□□□□□ -0.38
LIMD1-202ENST00000440097 ZNF454Q8N9F8 522 aa12.71□□□□□ -0.38
LIMD1-202ENST00000440097 OR8K3Q8NH51 312 aa12.71□□□□□ -0.38
LIMD1-202ENST00000440097 OR1S1Q8NH92 325 aa12.71□□□□□ -0.38
LIMD1-202ENST00000440097 THEM6Q8WUY1 208 aa12.71□□□□□ -0.38
LIMD1-202ENST00000440097 SMIM19Q96E16 107 aa12.71□□□□□ -0.38
LIMD1-202ENST00000440097 C5orf34Q96MH7 638 aa12.71□□□□□ -0.38
LIMD1-202ENST00000440097 RASL10BQ96S79 203 aa12.71□□□□□ -0.38
LIMD1-202ENST00000440097 WDR54Q9H977 334 aa12.71□□□□□ -0.38
LIMD1-202ENST00000440097 R4GN57 208 aa12.71□□□□□ -0.38
LIMD1-202ENST00000440097 ZFHX4Q86UP3 3567 aa12.71□□□□□ -0.38
LIMD1-202ENST00000440097 ITGA10O75578 1167 aa12.7□□□□□ -0.38
LIMD1-202ENST00000440097 KDM4BO94953 1096 aa12.7□□□□□ -0.38
LIMD1-202ENST00000440097 SP9P0CG40 484 aa12.7□□□□□ -0.38
LIMD1-202ENST00000440097 OR8G3PP0DMU2 310 aa12.7□□□□□ -0.38
LIMD1-202ENST00000440097 IL11P20809 199 aa12.7□□□□□ -0.38
LIMD1-202ENST00000440097 SLC25A1P53007 311 aa12.7□□□□□ -0.38
LIMD1-202ENST00000440097 SEC61A1P61619 476 aaKnown RBP12.7□□□□□ -0.38
LIMD1-202ENST00000440097 CDK5R1Q15078 307 aa12.7□□□□□ -0.38
LIMD1-202ENST00000440097 DPY19L4Q7Z388 723 aa12.7□□□□□ -0.38
LIMD1-202ENST00000440097 HSD17B13Q7Z5P4 300 aaPredicted RBP12.7□□□□□ -0.38
LIMD1-202ENST00000440097 ST8SIA1Q92185 356 aa12.7□□□□□ -0.38
LIMD1-202ENST00000440097 TMPRSS13Q9BYE2 586 aa12.7□□□□□ -0.38
LIMD1-202ENST00000440097 ST6GALNAC2Q9UJ37 374 aa12.7□□□□□ -0.38
LIMD1-202ENST00000440097 B3GALT1Q9Y5Z6 326 aa12.7□□□□□ -0.38
LIMD1-202ENST00000440097 IFNGR1P15260 489 aa12.7□□□□□ -0.38
LIMD1-202ENST00000440097 MC2RQ01718 297 aa12.7□□□□□ -0.38
LIMD1-202ENST00000440097 SLC16A9Q7RTY1 509 aa12.7□□□□□ -0.38
LIMD1-202ENST00000440097 TEX19Q8NA77 164 aa12.7□□□□□ -0.38
LIMD1-202ENST00000440097 OR5M1Q8NGP8 315 aa12.7□□□□□ -0.38
LIMD1-202ENST00000440097 MRPS24Q96EL2 167 aaKnown RBP12.7□□□□□ -0.38
LIMD1-202ENST00000440097 OR14A2Q96R54 314 aa12.7□□□□□ -0.38
LIMD1-202ENST00000440097 ARL6Q9H0F7 186 aa12.7□□□□□ -0.38
LIMD1-202ENST00000440097 WDR76Q9H967 626 aa12.7□□□□□ -0.38
LIMD1-202ENST00000440097 SDHAF3Q9NRP4 125 aa12.7□□□□□ -0.38
LIMD1-202ENST00000440097 PRELID3BQ9Y3B1 194 aa12.7□□□□□ -0.38
LIMD1-202ENST00000440097 PCDHGA9Q9Y5G4 932 aaKnown RBP12.7□□□□□ -0.38
LIMD1-202ENST00000440097 TRAV1-2A0A0B4J238 106 aa12.69□□□□□ -0.38
LIMD1-202ENST00000440097 SLC16A7O60669 478 aa12.69□□□□□ -0.38
LIMD1-202ENST00000440097 KHDRBS3O75525 346 aaKnown RBP12.69□□□□□ -0.38
LIMD1-202ENST00000440097 SIX6O95475 246 aa12.69□□□□□ -0.38
LIMD1-202ENST00000440097 TXNDC12O95881 172 aa12.69□□□□□ -0.38
LIMD1-202ENST00000440097 SERPINA3P01011 423 aa12.69□□□□□ -0.38
LIMD1-202ENST00000440097 GABRA1P14867 456 aa12.69□□□□□ -0.38
LIMD1-202ENST00000440097 CPN1P15169 458 aa12.69□□□□□ -0.38
LIMD1-202ENST00000440097 RPL27P61353 136 aaKnown RBP12.69□□□□□ -0.38
LIMD1-202ENST00000440097 UBE2NLQ5JXB2 153 aa12.69□□□□□ -0.38
LIMD1-202ENST00000440097 B3GNTL1Q67FW5 361 aaPredicted RBP12.69□□□□□ -0.38
LIMD1-202ENST00000440097 RPL22L1Q6P5R6 122 aaKnown RBP12.69□□□□□ -0.38
LIMD1-202ENST00000440097 CLRN3Q8NCR9 226 aa12.69□□□□□ -0.38
LIMD1-202ENST00000440097 STK35Q8TDR2 534 aa12.69□□□□□ -0.38
LIMD1-202ENST00000440097 SPACA9Q96E40 222 aaPredicted RBP12.69□□□□□ -0.38
LIMD1-202ENST00000440097 DERL3Q96Q80 235 aa12.69□□□□□ -0.38
LIMD1-202ENST00000440097 HPF1Q9NWY4 346 aa12.69□□□□□ -0.38
LIMD1-202ENST00000440097 KLK11Q9UBX7 282 aa12.69□□□□□ -0.38
LIMD1-202ENST00000440097 WIF1Q9Y5W5 379 aa12.69□□□□□ -0.38
LIMD1-202ENST00000440097 GVINP1Q7Z2Y8 2422 aa12.69□□□□□ -0.38
LIMD1-202ENST00000440097 LNP1A1A4G5 178 aa12.69□□□□□ -0.38
LIMD1-202ENST00000440097 CREBL2O60519 120 aaPredicted RBP12.69□□□□□ -0.38
LIMD1-202ENST00000440097 NPIPB7O75200 414 aa12.69□□□□□ -0.38
LIMD1-202ENST00000440097 OR2A4O95047 310 aa12.69□□□□□ -0.38
LIMD1-202ENST00000440097 ONECUT2O95948 504 aa12.69□□□□□ -0.38
LIMD1-202ENST00000440097 CALCRP30988 508 aa12.69□□□□□ -0.38
LIMD1-202ENST00000440097 APOBEC1P41238 236 aaKnown RBP12.69□□□□□ -0.38
LIMD1-202ENST00000440097 CLDN6P56747 220 aa12.69□□□□□ -0.38
LIMD1-202ENST00000440097 GK2Q14410 553 aaPredicted RBP12.69□□□□□ -0.38
LIMD1-202ENST00000440097 LINC00303Q3SY05 128 aa12.69□□□□□ -0.38
LIMD1-202ENST00000440097 ELFN2Q5R3F8 820 aa12.69□□□□□ -0.38
LIMD1-202ENST00000440097 SERPINA12Q8IW75 414 aa12.69□□□□□ -0.38
LIMD1-202ENST00000440097 PDZD9Q8IXQ8 264 aa12.69□□□□□ -0.38
LIMD1-202ENST00000440097 LILRB1Q8NHL6 650 aaPredicted RBP12.69□□□□□ -0.38
LIMD1-202ENST00000440097 DDIT4LQ96D03 193 aa12.69□□□□□ -0.38
LIMD1-202ENST00000440097 OR2A7Q96R45 310 aa12.69□□□□□ -0.38
LIMD1-202ENST00000440097 INTS14Q96SY0 518 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms