RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 FXYD4P59646 89 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 KCNJ10P78508 379 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 OR52I1Q8NGK6 324 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 MMABQ96EY8 250 aaPredicted RBP6.61□□□□□ -1.35
VPS53-204ENST00000437048 ALX4Q9H161 411 aaPredicted RBP6.61□□□□□ -1.35
VPS53-204ENST00000437048 OR5AC2Q9NZP5 309 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 CSAG2Q9Y5P2 127 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 DBHP09172 617 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 GDF5P43026 501 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 POM121L1PQ3SYA9 428 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 SAMD7Q7Z3H4 446 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 DCBLD2Q96PD2 775 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 MRPS28Q9Y2Q9 187 aaKnown RBP6.61□□□□□ -1.35
VPS53-204ENST00000437048 FER1L5A0AVI2 2057 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 H7C1C5 153 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 MFNGO00587 321 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 XRCC2O43543 280 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 BEX3Q00994 111 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 TRMT12Q53H54 448 aaKnown RBP6.61□□□□□ -1.35
VPS53-204ENST00000437048 ZNF542PQ5EBM4 170 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 UBE3DQ7Z6J8 389 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 OR5B3Q8NH48 314 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 SLC45A2Q9UMX9 530 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 CCDC187A0A096LP49 1063 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 ZNF749O43361 778 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 GSTZ1O43708 216 aaPredicted RBP6.61□□□□□ -1.35
VPS53-204ENST00000437048 GAPDHP04406 335 aaKnown RBP6.61□□□□□ -1.35
VPS53-204ENST00000437048 XCR1P46094 333 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 DIO1P49895 249 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 ENTPD8Q5MY95 495 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 C11orf87Q6NUJ2 197 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 SLC38A5Q8WUX1 472 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 MVB12AQ96EY5 273 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 SENP5Q96HI0 755 aaPredicted RBP6.61□□□□□ -1.35
VPS53-204ENST00000437048 FAM210BQ96KR6 192 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 TRBV9A0A0B4J1U6 114 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 CLEC9AQ6UXN8 241 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 HEYLQ9NQ87 328 aaPredicted RBP6.61□□□□□ -1.35
VPS53-204ENST00000437048 FZD9O00144 591 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 NRASP01111 189 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 HRASP01112 189 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 KRASP01116 189 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 FPR2P25090 351 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 SIM1P81133 766 aaPredicted RBP6.61□□□□□ -1.35
VPS53-204ENST00000437048 MFAP5Q13361 173 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 OR1Q1Q15612 314 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 RTP2Q5QGT7 225 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 TMEM201Q5SNT2 666 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 OR7E24Q6IFN5 339 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 LCN10Q6JVE6 187 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 LIPIQ6XZB0 460 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 OR52L2PQ8NGH6 319 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 MS4A10Q96PG2 267 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 ARHGAP9Q9BRR9 750 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 UTP23Q9BRU9 249 aaKnown RBP6.61□□□□□ -1.35
VPS53-204ENST00000437048 NMES1Q9C002 83 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 RHCGQ9UBD6 479 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 HEMK1Q9Y5R4 338 aaPredicted RBP6.61□□□□□ -1.35
VPS53-204ENST00000437048 IER3IP1Q9Y5U9 82 aa6.61□□□□□ -1.35
VPS53-204ENST00000437048 HOXB5P09067 269 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 BMP5P22003 454 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 PPP1CAP62136 330 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 NSDHLQ15738 373 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 PKDCCQ504Y2 493 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 PRR27Q6MZM9 219 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 PTX4Q96A99 478 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 OR1F2PQ96R84 312 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 DRGXA6NNA5 263 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 SOD1P00441 154 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 LMO2P25791 158 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 OR10P1Q8NGE3 313 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 OR4C16Q8NGL9 310 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 PTP4A1Q93096 173 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 CSNK1G1Q9HCP0 422 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 AJAP1Q9UKB5 411 aaPredicted RBP6.6□□□□□ -1.35
VPS53-204ENST00000437048 CHD3Q12873 2000 aaKnown RBP6.6□□□□□ -1.35
VPS53-204ENST00000437048 NCOR1O75376 2440 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 PRAMEF27A3QJZ7 478 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 TMEM235A6NFC5 223 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 A6NL46 340 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 APOBEC1P41238 236 aaKnown RBP6.6□□□□□ -1.35
VPS53-204ENST00000437048 PRAMEF9Q5VWM5 478 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 DRAM2Q6UX65 266 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 ZNF429Q86V71 674 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 HSD17B11Q8NBQ5 300 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 C3orf30Q96M34 536 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 JSRP1Q96MG2 331 aaPredicted RBP6.6□□□□□ -1.35
VPS53-204ENST00000437048 M0QZQ0 153 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 CCSO14618 274 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 EPXP11678 715 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 DAOP14920 347 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 DEFB134Q4QY38 66 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 RIPPLY2Q5TAB7 128 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 IL20RBQ6UXL0 311 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 RPS27LQ71UM5 84 aaKnown RBP6.6□□□□□ -1.35
VPS53-204ENST00000437048 H2BFWTQ7Z2G1 175 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 DEFB128Q7Z7B8 93 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 LILRB1Q8NHL6 650 aaPredicted RBP6.6□□□□□ -1.35
VPS53-204ENST00000437048 ZMYND19Q96E35 227 aaPredicted RBP6.6□□□□□ -1.35
VPS53-204ENST00000437048 DOK2O60496 412 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms