RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 PSORS1C1Q9UIG5 152 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 EXOGQ9Y2C4 368 aaKnown RBP8.86□□□□□ -0.99
CD44-207ENST00000425428 UGT2A1Q9Y4X1 527 aa8.86□□□□□ -0.99
CD44-207ENST00000425428 HEATR1Q9H583 2144 aaKnown RBP8.85□□□□□ -0.99
CD44-207ENST00000425428 KALRNO60229 2985 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 ARPC4-TTLL3A0A0A6YYG9 625 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 ZNF878C9JN71 531 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 DOK2O60496 412 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 SELENOFO60613 162 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 MPZL1O95297 269 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 TFP02787 698 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 H2BFMP0C1H6 154 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 CRHBPP24387 322 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 GRB2P62993 217 aaKnown RBP8.85□□□□□ -0.99
CD44-207ENST00000425428 EGR3Q06889 387 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 PIGFQ07326 219 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 FAM27E3Q08E93 113 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 PPA1Q15181 289 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 MEP1BQ16820 701 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 HIKESHIQ53FT3 197 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 ALKBH2Q6NS38 261 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 TMEM154Q6P9G4 183 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 STAC2Q6ZMT1 411 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 RHOUQ7L0Q8 258 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 LINC00346Q8IVM7 164 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 WDFY1Q8IWB7 410 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 SKA3Q8IX90 412 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 TIGD4Q8IY51 512 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 KLHL36Q8N4N3 616 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 IL17RDQ8NFM7 739 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 OR4F15Q8NGB8 312 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 OR52N5Q8NH56 324 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 GGHQ92820 318 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 S100PBPQ96BU1 408 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 ZNF837Q96EG3 531 aaPredicted RBP8.85□□□□□ -0.99
CD44-207ENST00000425428 TBX5Q99593 518 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 HDHD2Q9H0R4 259 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 NIPAL2Q9H841 368 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 CYB5R1Q9UHQ9 305 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 DIMT1Q9UNQ2 313 aaKnown RBP8.85□□□□□ -0.99
CD44-207ENST00000425428 SPEF1Q9Y4P9 236 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 PCDHGB5Q9Y5G0 923 aa8.85□□□□□ -0.99
CD44-207ENST00000425428 A0A087WXM4 84 aa8.84□□□□□ -0.99
CD44-207ENST00000425428 NKX2-6A6NCS4 301 aa8.84□□□□□ -0.99
CD44-207ENST00000425428 OR6C6A6NF89 314 aa8.84□□□□□ -0.99
CD44-207ENST00000425428 TUBAL3A6NHL2 446 aa8.84□□□□□ -0.99
CD44-207ENST00000425428 ZNF254O75437 659 aa8.84□□□□□ -0.99
CD44-207ENST00000425428 GPANK1O95872 356 aa8.84□□□□□ -0.99
CD44-207ENST00000425428 CDK1P06493 297 aa8.84□□□□□ -0.99
CD44-207ENST00000425428 ZNF32P17041 273 aa8.84□□□□□ -0.99
CD44-207ENST00000425428 EDNRAP25101 427 aa8.84□□□□□ -0.99
CD44-207ENST00000425428 RIDAP52758 137 aaKnown RBP8.84□□□□□ -0.99
CD44-207ENST00000425428 GALK2Q01415 458 aa8.84□□□□□ -0.99
CD44-207ENST00000425428 MRPL28Q13084 256 aaKnown RBP8.84□□□□□ -0.99
CD44-207ENST00000425428 RAB35Q15286 201 aa8.84□□□□□ -0.99
CD44-207ENST00000425428 TBC1D28Q2M2D7 210 aa8.84□□□□□ -0.99
CD44-207ENST00000425428 KCTD21Q4G0X4 260 aa8.84□□□□□ -0.99
CD44-207ENST00000425428 ZNF322Q6U7Q0 402 aaPredicted RBP8.84□□□□□ -0.99
CD44-207ENST00000425428 B3GLCTQ6Y288 498 aa8.84□□□□□ -0.99
CD44-207ENST00000425428 CDC20BQ86Y33 519 aa8.84□□□□□ -0.99
CD44-207ENST00000425428 EGFL6Q8IUX8 553 aa8.84□□□□□ -0.99
CD44-207ENST00000425428 OR52I1Q8NGK6 324 aa8.84□□□□□ -0.99
CD44-207ENST00000425428 SSC4DQ8WTU2 575 aa8.84□□□□□ -0.99
CD44-207ENST00000425428 ITLN2Q8WWU7 325 aaPredicted RBP8.84□□□□□ -0.99
CD44-207ENST00000425428 NABP1Q96AH0 204 aa8.84□□□□□ -0.99
CD44-207ENST00000425428 BOD1Q96IK1 185 aa8.84□□□□□ -0.99
CD44-207ENST00000425428 ATF6BQ99941 703 aa8.84□□□□□ -0.99
CD44-207ENST00000425428 MND1Q9BWT6 205 aa8.84□□□□□ -0.99
CD44-207ENST00000425428 FGF20Q9NP95 211 aaPredicted RBP8.84□□□□□ -0.99
CD44-207ENST00000425428 MRPL22Q9NWU5 206 aaKnown RBP8.84□□□□□ -0.99
CD44-207ENST00000425428 UBAP1Q9NZ09 502 aa8.84□□□□□ -0.99
CD44-207ENST00000425428 EIF3KQ9UBQ5 218 aaKnown RBP8.84□□□□□ -0.99
CD44-207ENST00000425428 GDF2Q9UK05 429 aaPredicted RBP8.84□□□□□ -0.99
CD44-207ENST00000425428 RALYQ9UKM9 306 aaKnown RBP8.84□□□□□ -0.99
CD44-207ENST00000425428 MAGEA13PA6NCF6 341 aa8.84□□□□□ -1
CD44-207ENST00000425428 VSTM5A8MXK1 200 aa8.84□□□□□ -1
CD44-207ENST00000425428 APOL3O95236 402 aa8.84□□□□□ -1
CD44-207ENST00000425428 HLA-HP01893 362 aa8.84□□□□□ -1
CD44-207ENST00000425428 MT-ND5P03915 603 aa8.84□□□□□ -1
CD44-207ENST00000425428 PLA2G2AP14555 144 aa8.84□□□□□ -1
CD44-207ENST00000425428 HTR5AP47898 357 aa8.84□□□□□ -1
CD44-207ENST00000425428 GDI2P50395 445 aaKnown RBP8.84□□□□□ -1
CD44-207ENST00000425428 GBX2P52951 348 aaPredicted RBP8.84□□□□□ -1
CD44-207ENST00000425428 TPTEP56180 551 aa8.84□□□□□ -1
CD44-207ENST00000425428 TSC22D1Q15714 1073 aa8.84□□□□□ -1
CD44-207ENST00000425428 ZNF829Q3KNS6 432 aaPredicted RBP8.84□□□□□ -1
CD44-207ENST00000425428 ELFN2Q5R3F8 820 aa8.84□□□□□ -1
CD44-207ENST00000425428 DEGS2Q6QHC5 323 aa8.84□□□□□ -1
CD44-207ENST00000425428 PRSS48Q7RTY5 328 aa8.84□□□□□ -1
CD44-207ENST00000425428 YIPF7Q8N8F6 280 aa8.84□□□□□ -1
CD44-207ENST00000425428 SLAMF6Q96DU3 332 aa8.84□□□□□ -1
CD44-207ENST00000425428 ALG8Q9BVK2 526 aa8.84□□□□□ -1
CD44-207ENST00000425428 OR2H1Q9GZK4 316 aa8.84□□□□□ -1
CD44-207ENST00000425428 CDH20Q9HBT6 801 aa8.84□□□□□ -1
CD44-207ENST00000425428 SULT1C4O75897 302 aa8.83□□□□□ -1
CD44-207ENST00000425428 RPSAP08865 295 aaKnown RBP8.83□□□□□ -1
CD44-207ENST00000425428 COX5BP10606 129 aa8.83□□□□□ -1
CD44-207ENST00000425428 CBR1P16152 277 aa8.83□□□□□ -1
CD44-207ENST00000425428 ALOX5APP20292 161 aa8.83□□□□□ -1
CD44-207ENST00000425428 CCNOP22674 350 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms