RNA–Protein interactions for RNA: ENST00000414700.7

SHMT2-202, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 2,006 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-202ENST00000414700 C1DQ13901 141 aaKnown RBP13.78□□□□□ -0.2
SHMT2-202ENST00000414700 KLHL12Q53G59 568 aa13.78□□□□□ -0.2
SHMT2-202ENST00000414700 PYDC2Q56P42 97 aa13.78□□□□□ -0.2
SHMT2-202ENST00000414700 EMC4Q5J8M3 183 aa13.78□□□□□ -0.2
SHMT2-202ENST00000414700 PM20D2Q8IYS1 436 aa13.78□□□□□ -0.2
SHMT2-202ENST00000414700 C9orf62Q8N4C0 152 aa13.78□□□□□ -0.2
SHMT2-202ENST00000414700 ABCB9Q9NP78 766 aa13.78□□□□□ -0.2
SHMT2-202ENST00000414700 ASF1BQ9NVP2 202 aa13.78□□□□□ -0.2
SHMT2-202ENST00000414700 STUB1Q9UNE7 303 aa13.78□□□□□ -0.2
SHMT2-202ENST00000414700 FAM171A2A8MVW0 826 aa13.77□□□□□ -0.21
SHMT2-202ENST00000414700 CYTIPO60759 359 aa13.77□□□□□ -0.21
SHMT2-202ENST00000414700 PIPP12273 146 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-202ENST00000414700 SLC2A5P22732 501 aa13.77□□□□□ -0.21
SHMT2-202ENST00000414700 DAP3P51398 398 aaKnown RBP13.77□□□□□ -0.21
SHMT2-202ENST00000414700 TDGF1P3P51864 188 aa13.77□□□□□ -0.21
SHMT2-202ENST00000414700 CDH11P55287 796 aa13.77□□□□□ -0.21
SHMT2-202ENST00000414700 RRAS2P62070 204 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-202ENST00000414700 FMODQ06828 376 aa13.77□□□□□ -0.21
SHMT2-202ENST00000414700 MZT2BQ6NZ67 158 aa13.77□□□□□ -0.21
SHMT2-202ENST00000414700 NIPAL3Q6P499 406 aa13.77□□□□□ -0.21
SHMT2-202ENST00000414700 LYPD4Q6UWN0 246 aa13.77□□□□□ -0.21
SHMT2-202ENST00000414700 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-202ENST00000414700 OR8H1Q8NGG4 311 aa13.77□□□□□ -0.21
SHMT2-202ENST00000414700 LHFPL5Q8TAF8 219 aa13.77□□□□□ -0.21
SHMT2-202ENST00000414700 RNF128Q8TEB7 428 aa13.77□□□□□ -0.21
SHMT2-202ENST00000414700 SARAFQ96BY9 339 aa13.77□□□□□ -0.21
SHMT2-202ENST00000414700 NMNAT2Q9BZQ4 307 aa13.77□□□□□ -0.21
SHMT2-202ENST00000414700 KCNN2Q9H2S1 579 aa13.77□□□□□ -0.21
SHMT2-202ENST00000414700 ELF5Q9UKW6 265 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-202ENST00000414700 CFAP46Q8IYW2 2715 aa13.77□□□□□ -0.21
SHMT2-202ENST00000414700 CACNA1CQ13936 2221 aa13.77□□□□□ -0.21
SHMT2-202ENST00000414700 PRSS37A4D1T9 235 aa13.76□□□□□ -0.21
SHMT2-202ENST00000414700 NPIPB13A6NJU9 1138 aa13.76□□□□□ -0.21
SHMT2-202ENST00000414700 NPIPB4C9JG80 1138 aa13.76□□□□□ -0.21
SHMT2-202ENST00000414700 XKRYO14609 159 aa13.76□□□□□ -0.21
SHMT2-202ENST00000414700 PRODHO43272 600 aa13.76□□□□□ -0.21
SHMT2-202ENST00000414700 VAMP5O95183 116 aa13.76□□□□□ -0.21
SHMT2-202ENST00000414700 HLA-DQB1P01920 261 aa13.76□□□□□ -0.21
SHMT2-202ENST00000414700 CRYBB2P43320 205 aa13.76□□□□□ -0.21
SHMT2-202ENST00000414700 SLC16A1P53985 500 aa13.76□□□□□ -0.21
SHMT2-202ENST00000414700 ZNF91Q05481 1191 aa13.76□□□□□ -0.21
SHMT2-202ENST00000414700 RASGEF1BQ0VAM2 473 aa13.76□□□□□ -0.21
SHMT2-202ENST00000414700 DOC2BQ14184 412 aa13.76□□□□□ -0.21
SHMT2-202ENST00000414700 POU4F3Q15319 338 aa13.76□□□□□ -0.21
SHMT2-202ENST00000414700 ETFDHQ16134 617 aa13.76□□□□□ -0.21
SHMT2-202ENST00000414700 CARD17Q5XLA6 110 aa13.76□□□□□ -0.21
SHMT2-202ENST00000414700 OR6V1Q8N148 313 aa13.76□□□□□ -0.21
SHMT2-202ENST00000414700 DUSP18Q8NEJ0 188 aa13.76□□□□□ -0.21
SHMT2-202ENST00000414700 KISS1RQ969F8 398 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-202ENST00000414700 SLC25A46Q96AG3 418 aa13.76□□□□□ -0.21
SHMT2-202ENST00000414700 DIRAS2Q96HU8 199 aa13.76□□□□□ -0.21
SHMT2-202ENST00000414700 KCNK17Q96T54 332 aa13.76□□□□□ -0.21
SHMT2-202ENST00000414700 RERGLQ9H628 205 aa13.76□□□□□ -0.21
SHMT2-202ENST00000414700 SRA1Q9HD15 236 aaKnown RBP13.76□□□□□ -0.21
SHMT2-202ENST00000414700 MCTS1Q9ULC4 181 aaKnown RBP13.76□□□□□ -0.21
SHMT2-202ENST00000414700 CLEC4AQ9UMR7 237 aa13.76□□□□□ -0.21
SHMT2-202ENST00000414700 LSM2Q9Y333 95 aaKnown RBP13.76□□□□□ -0.21
SHMT2-202ENST00000414700 FLVCR1Q9Y5Y0 555 aa13.76□□□□□ -0.21
SHMT2-202ENST00000414700 IGKV1D-43A0A0B4J1Z2 117 aa13.76□□□□□ -0.21
SHMT2-202ENST00000414700 SPI1P17947 270 aa13.76□□□□□ -0.21
SHMT2-202ENST00000414700 PSMA1P25786 263 aaKnown RBP13.76□□□□□ -0.21
SHMT2-202ENST00000414700 PER3P56645 1201 aa13.76□□□□□ -0.21
SHMT2-202ENST00000414700 MEDAGQ5VYS4 303 aa13.76□□□□□ -0.21
SHMT2-202ENST00000414700 CHMP1BQ7LBR1 199 aa13.76□□□□□ -0.21
SHMT2-202ENST00000414700 SHFQ7M4L6 423 aa13.76□□□□□ -0.21
SHMT2-202ENST00000414700 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.76□□□□□ -0.21
SHMT2-202ENST00000414700 RBFOX1Q9NWB1 397 aaKnown RBP13.76□□□□□ -0.21
SHMT2-202ENST00000414700 MCUBQ9NWR8 336 aa13.76□□□□□ -0.21
SHMT2-202ENST00000414700 SHANK1Q9Y566 2161 aa13.76□□□□□ -0.21
SHMT2-202ENST00000414700 INTS1Q8N201 2190 aaKnown RBP13.75□□□□□ -0.21
SHMT2-202ENST00000414700 SLC22A23A1A5C7 686 aa13.75□□□□□ -0.21
SHMT2-202ENST00000414700 SMLR1H3BR10 107 aa13.75□□□□□ -0.21
SHMT2-202ENST00000414700 I3L521 148 aa13.75□□□□□ -0.21
SHMT2-202ENST00000414700 SLC43A1O75387 559 aa13.75□□□□□ -0.21
SHMT2-202ENST00000414700 SYNGR4O95473 234 aa13.75□□□□□ -0.21
SHMT2-202ENST00000414700 GPANK1O95872 356 aa13.75□□□□□ -0.21
SHMT2-202ENST00000414700 IL1AP01583 271 aa13.75□□□□□ -0.21
SHMT2-202ENST00000414700 PGA4P0DJD7 388 aa13.75□□□□□ -0.21
SHMT2-202ENST00000414700 PGA3P0DJD8 388 aa13.75□□□□□ -0.21
SHMT2-202ENST00000414700 CTLA4P16410 223 aa13.75□□□□□ -0.21
SHMT2-202ENST00000414700 PAICSP22234 425 aaKnown RBP13.75□□□□□ -0.21
SHMT2-202ENST00000414700 EDNRAP25101 427 aa13.75□□□□□ -0.21
SHMT2-202ENST00000414700 PYCR1P32322 319 aa13.75□□□□□ -0.21
SHMT2-202ENST00000414700 SELENOPP49908 381 aa13.75□□□□□ -0.21
SHMT2-202ENST00000414700 LGALS3BPQ08380 585 aa13.75□□□□□ -0.21
SHMT2-202ENST00000414700 KLRB1Q12918 225 aa13.75□□□□□ -0.21
SHMT2-202ENST00000414700 DDI2Q5TDH0 399 aa13.75□□□□□ -0.21
SHMT2-202ENST00000414700 OTPQ5XKR4 325 aa13.75□□□□□ -0.21
SHMT2-202ENST00000414700 TMEM65Q6PI78 240 aa13.75□□□□□ -0.21
SHMT2-202ENST00000414700 ADGRE4PQ86SQ3 457 aa13.75□□□□□ -0.21
SHMT2-202ENST00000414700 FOXN4Q96NZ1 517 aa13.75□□□□□ -0.21
SHMT2-202ENST00000414700 TEAD3Q99594 435 aa13.75□□□□□ -0.21
SHMT2-202ENST00000414700 SF3B5Q9BWJ5 86 aaKnown RBP13.75□□□□□ -0.21
SHMT2-202ENST00000414700 MRPL13Q9BYD1 178 aaKnown RBP13.75□□□□□ -0.21
SHMT2-202ENST00000414700 PRRG4Q9BZD6 226 aa13.75□□□□□ -0.21
SHMT2-202ENST00000414700 NDUFB11Q9NX14 153 aa13.75□□□□□ -0.21
SHMT2-202ENST00000414700 SSR3Q9UNL2 185 aa13.75□□□□□ -0.21
SHMT2-202ENST00000414700 A0A1W2PQL4 384 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-202ENST00000414700 TGM4P49221 684 aa13.74□□□□□ -0.21
SHMT2-202ENST00000414700 RPS7P62081 194 aaKnown RBP13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 88.2 ms