RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 CEACAM7Q14002 265 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 ADIPOQQ15848 244 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 OR14A16Q8NHC5 309 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 GPR55Q9Y2T6 319 aaPredicted RBP12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 WASHC3Q9Y3C0 194 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 FANCMQ8IYD8 2048 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 NSG1A0A0A6YYJ2 146 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 DRGXA6NNA5 263 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 SEMA7AO75326 666 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 NQO2P16083 231 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 LRP11Q86VZ4 500 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 RPL3LQ92901 407 aaKnown RBP12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 IKZF4Q9H2S9 585 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 AHCTF1Q8WYP5 2266 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 ST8SIA5O15466 376 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 LMX1BO60663 402 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 ZNF217O75362 1048 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 ZFAND5O76080 213 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 FGF4P08620 206 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 STAG3L3P0CL85 134 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 OR52R1Q8NGF1 315 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 GAL3ST2Q9H3Q3 398 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 IGHEP01854 428 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 C1QBP02746 253 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 NR0B2Q15466 257 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 TMEM184AQ6ZMB5 413 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 MISPQ8IVT2 679 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 SLC22A12Q96S37 553 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 MED20Q9H944 212 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 A0A1W2PQU0 124 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 NAT1P18440 290 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 TRA2BP62995 288 aaKnown RBP12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 SLC35A4Q96G79 324 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 APIPQ96GX9 242 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 IL17FQ96PD4 163 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 DDOQ99489 341 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 LRIT1Q9P2V4 623 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 SLC22A13Q9Y226 551 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 UFC1Q9Y3C8 167 aa12.29□□□□□ -0.44
CCDC88A-204ENST00000413716 BCAT2O15382 392 aaPredicted RBP12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 FRS3O43559 492 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 LDB3O75112 727 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 FAM87AP0C7U9 286 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 CR2P20023 1033 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 EPHA2P29317 976 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 OR5M10Q6IEU7 315 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 PTPRUQ92729 1446 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 TSPAN13O95857 204 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 GRPP07492 148 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 CPEP16870 476 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 TBPL2Q6SJ96 375 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 IRF2BP1Q8IU81 584 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 OR4D10Q8NGI6 311 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 COPS9Q8WXC6 57 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 MRIQ9BWK5 157 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 NDUFB11Q9NX14 153 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 A0A087X0M5 115 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 A0A1B0GX30 115 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 PAPLNO95428 1278 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 CEBPDP49716 269 aaPredicted RBP12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 SLC39A11Q8N1S5 342 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 ACVR1CQ8NER5 493 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 OR10D4PQ8NGN7 298 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 MARCH5Q9NX47 278 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 MRPL2Q5T653 305 aaKnown RBP12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 CDCA2Q69YH5 1023 aaPredicted RBP12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 CELF2-AS1Q8N7Q2 184 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 WDR31Q8NA23 367 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 DNAJC15Q9Y5T4 150 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 SNNO75324 88 aaPredicted RBP12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 KIF26BQ2KJY2 2108 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 F13BP05160 661 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 ABHD4Q8TB40 342 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 PHYHIPQ92561 330 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 TAAR6Q96RI8 345 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 AKAP11Q9UKA4 1901 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 OR8G3PP0DMU2 310 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 ZP3P21754 424 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 MMP11P24347 488 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 TMEM176BQ3YBM2 270 aaPredicted RBP12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 PLPP7Q8NBV4 271 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 OR6M1Q8NGM8 313 aa12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 SDR39U1Q9NRG7 319 aaPredicted RBP12.28□□□□□ -0.44
CCDC88A-204ENST00000413716 FCN1O00602 326 aa12.27□□□□□ -0.44
CCDC88A-204ENST00000413716 PSMB6P28072 239 aa12.27□□□□□ -0.44
CCDC88A-204ENST00000413716 RPL12P30050 165 aaKnown RBP12.27□□□□□ -0.44
CCDC88A-204ENST00000413716 ERVPABLB-1P60509 514 aa12.27□□□□□ -0.44
CCDC88A-204ENST00000413716 ZP2Q05996 745 aa12.27□□□□□ -0.44
CCDC88A-204ENST00000413716 SLC23A1Q9UHI7 598 aa12.27□□□□□ -0.44
CCDC88A-204ENST00000413716 TMEM59LQ9UK28 342 aa12.27□□□□□ -0.44
CCDC88A-204ENST00000413716 FLVCR2Q9UPI3 526 aa12.27□□□□□ -0.44
CCDC88A-204ENST00000413716 TRABD2BA6NFA1 517 aa12.27□□□□□ -0.44
CCDC88A-204ENST00000413716 SYT5O00445 386 aa12.27□□□□□ -0.44
CCDC88A-204ENST00000413716 CTDSP2O14595 271 aa12.27□□□□□ -0.44
CCDC88A-204ENST00000413716 AQP9O43315 295 aa12.27□□□□□ -0.44
CCDC88A-204ENST00000413716 CD99P14209 185 aa12.27□□□□□ -0.44
CCDC88A-204ENST00000413716 MGMTP16455 207 aa12.27□□□□□ -0.44
CCDC88A-204ENST00000413716 ZNF140P52738 457 aaPredicted RBP12.27□□□□□ -0.44
CCDC88A-204ENST00000413716 RRADP55042 308 aa12.27□□□□□ -0.44
CCDC88A-204ENST00000413716 EXT1Q16394 746 aa12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms