RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 RANBP3Q9H6Z4 567 aaPredicted RBP11.99□□□□□ -0.49
VPS54-203ENST00000409558 ASH2LQ9UBL3 628 aa11.99□□□□□ -0.49
VPS54-203ENST00000409558 RARRES3Q9UL19 164 aa11.99□□□□□ -0.49
VPS54-203ENST00000409558 TMEM272A0A1B0GTI8 110 aa11.99□□□□□ -0.49
VPS54-203ENST00000409558 A0A1W2PP11 408 aa11.99□□□□□ -0.49
VPS54-203ENST00000409558 A0A1W2PQM1 296 aa11.99□□□□□ -0.49
VPS54-203ENST00000409558 RER1O15258 196 aa11.99□□□□□ -0.49
VPS54-203ENST00000409558 MPC2O95563 127 aa11.99□□□□□ -0.49
VPS54-203ENST00000409558 VSIG10L2P0DP72 767 aa11.99□□□□□ -0.49
VPS54-203ENST00000409558 HSD11B1P28845 292 aa11.99□□□□□ -0.49
VPS54-203ENST00000409558 HSF1Q00613 529 aa11.99□□□□□ -0.49
VPS54-203ENST00000409558 SORDQ00796 357 aa11.99□□□□□ -0.49
VPS54-203ENST00000409558 DCAF12L2Q5VW00 463 aa11.99□□□□□ -0.49
VPS54-203ENST00000409558 RHOUQ7L0Q8 258 aa11.99□□□□□ -0.49
VPS54-203ENST00000409558 OR4K17Q8NGC6 315 aa11.99□□□□□ -0.49
VPS54-203ENST00000409558 OR10K1Q8NGX5 313 aa11.99□□□□□ -0.49
VPS54-203ENST00000409558 ZNF230Q9UIE0 474 aaPredicted RBP11.99□□□□□ -0.49
VPS54-203ENST00000409558 IGKV3D-11A0A0A0MRZ8 115 aa11.99□□□□□ -0.49
VPS54-203ENST00000409558 CD53P19397 219 aa11.99□□□□□ -0.49
VPS54-203ENST00000409558 HTR2CP28335 458 aa11.99□□□□□ -0.49
VPS54-203ENST00000409558 RAB14P61106 215 aa11.99□□□□□ -0.49
VPS54-203ENST00000409558 IDO2Q6ZQW0 420 aa11.99□□□□□ -0.49
VPS54-203ENST00000409558 GALNT16Q8N428 558 aa11.99□□□□□ -0.49
VPS54-203ENST00000409558 RDH8Q9NYR8 311 aa11.99□□□□□ -0.49
VPS54-203ENST00000409558 OR52A1Q9UKL2 312 aa11.99□□□□□ -0.49
VPS54-203ENST00000409558 NUDT21O43809 227 aaKnown RBP11.98□□□□□ -0.49
VPS54-203ENST00000409558 CCL4P13236 92 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 ANOS1P23352 680 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 PTBP1P26599 531 aaKnown RBP eCLIP11.98□□□□□ -0.495e-14■■■□□ 17.9
VPS54-203ENST00000409558 RIN1Q13671 783 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 KLHL24Q6TFL4 600 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 NAA40Q86UY6 237 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 MAFAQ8NHW3 353 aaPredicted RBP11.98□□□□□ -0.49
VPS54-203ENST00000409558 ASB5Q8WWX0 329 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 TMEM41AQ96HV5 264 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 SYT7O43581 403 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 RAB3DO95716 219 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 AKR1C4P17516 323 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 RFC3P40938 356 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 SLC25A1P53007 311 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 PER3P56645 1201 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 RASGEF1BQ0VAM2 473 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 CHAF1BQ13112 559 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 MYBPHQ13203 477 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 RAET1LQ5VY80 246 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 TEX261Q6UWH6 196 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 UNQ9370/PRO34162Q6UXP9 181 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 FOXRED2Q8IWF2 684 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 EXD3Q8N9H8 876 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 APCDD1LQ8NCL9 501 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 FAM71CQ8NEG0 241 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 OR52N4Q8NGI2 321 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 OR4D6Q8NGJ1 314 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 HOXB13Q92826 284 aaPredicted RBP11.98□□□□□ -0.49
VPS54-203ENST00000409558 SELENOIQ9C0D9 397 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 AKAP7Q9P0M2 348 aaPredicted RBP11.98□□□□□ -0.49
VPS54-203ENST00000409558 U3KQ87 197 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 ZNF814B7Z6K7 855 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 ZNF205O95201 554 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 WDPCPO95876 746 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 GNB3P16520 340 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 SLC26A5P58743 744 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 HSF2Q03933 536 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 ZNF684Q5T5D7 378 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 C1QTNF12Q5T7M4 302 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 CD276Q5ZPR3 534 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 D2HGDHQ8N465 521 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 C11orf40Q8WZ69 217 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 GAREM1Q9H706 876 aa11.98□□□□□ -0.49
VPS54-203ENST00000409558 C13orf42A0A1B0GVH6 325 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 GLSO94925 669 aaPredicted RBP11.97□□□□□ -0.49
VPS54-203ENST00000409558 RPS18P62269 152 aaKnown RBP11.97□□□□□ -0.49
VPS54-203ENST00000409558 ANKRD37Q7Z713 158 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 MUC20Q8N307 709 aaPredicted RBP11.97□□□□□ -0.49
VPS54-203ENST00000409558 HAVCR2Q8TDQ0 301 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 NOP16Q9Y3C1 178 aaKnown RBP11.97□□□□□ -0.49
VPS54-203ENST00000409558 SIT1Q9Y3P8 196 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 CENPBD1B2RD01 187 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 MS4A18H0YCH9 400 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 IGHV3-9P01782 118 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 SMAD4Q13485 552 aaKnown RBP11.97□□□□□ -0.49
VPS54-203ENST00000409558 MS4A18Q3C1V0 323 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 GLT8D1Q68CQ7 371 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 TEX19Q8NA77 164 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 RELL2Q8NC24 303 aaPredicted RBP11.97□□□□□ -0.49
VPS54-203ENST00000409558 OR52N5Q8NH56 324 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 STK35Q8TDR2 534 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 TMEM234Q8WY98 164 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 CCDC74BQ96LY2 380 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 SFXN2Q96NB2 322 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 RBP7Q96R05 134 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 C7orf66A4D0T2 115 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 LGALS8O00214 317 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 SLC22A5O76082 557 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 MPIG6BO95866 241 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 PNLIPRP2P54317 469 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 TNK1Q13470 666 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 ASPHD2Q6ICH7 369 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 RFPL4BQ6ZWI9 263 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 COMMD7Q86VX2 200 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms