RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 SEH1LQ96EE3 360 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 MS4A4AQ96JQ5 239 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 ACOXLQ9NUZ1 547 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 MARCH5Q9NX47 278 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 GDF2Q9UK05 429 aaPredicted RBP9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 B3GALT5Q9Y2C3 310 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 TOPAZ1Q8N9V7 1692 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 UBR2Q8IWV8 1755 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 ARID1BQ8NFD5 2236 aaPredicted RBP9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 ARRDC5A6NEK1 342 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 KLK8O60259 260 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 NPY4RP50391 375 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 DUSP5Q16690 384 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 SOWAHCQ53LP3 525 aaPredicted RBP9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 C1orf140Q5VVS0 124 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 ACSM5Q6NUN0 579 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 RIMKLAQ8IXN7 391 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 M0R2Z0 102 aa9.4□□□□□ -0.91
LIMCH1-203ENST00000396595 TERTO14746 1132 aaKnown RBP9.4□□□□□ -0.91
LIMCH1-203ENST00000396595 TAAR5O14804 337 aa9.4□□□□□ -0.91
LIMCH1-203ENST00000396595 SCRG1O75711 98 aa9.4□□□□□ -0.91
LIMCH1-203ENST00000396595 PDGFBP01127 241 aaPredicted RBP9.4□□□□□ -0.91
LIMCH1-203ENST00000396595 IGHEP01854 428 aa9.4□□□□□ -0.91
LIMCH1-203ENST00000396595 GLAP06280 429 aa9.4□□□□□ -0.91
LIMCH1-203ENST00000396595 EMP3P54852 163 aa9.4□□□□□ -0.91
LIMCH1-203ENST00000396595 DCXRQ7Z4W1 244 aa9.4□□□□□ -0.91
LIMCH1-203ENST00000396595 ZNF547Q8IVP9 402 aa9.4□□□□□ -0.91
LIMCH1-203ENST00000396595 OR2L13Q8N349 312 aa9.4□□□□□ -0.91
LIMCH1-203ENST00000396595 TMEM99Q8N816 258 aa9.4□□□□□ -0.91
LIMCH1-203ENST00000396595 OR1J2Q8NGS2 313 aa9.4□□□□□ -0.91
LIMCH1-203ENST00000396595 PFN4Q8NHR9 129 aa9.4□□□□□ -0.91
LIMCH1-203ENST00000396595 RHBDD1Q8TEB9 315 aa9.4□□□□□ -0.91
LIMCH1-203ENST00000396595 YIPF6Q96EC8 236 aa9.4□□□□□ -0.91
LIMCH1-203ENST00000396595 KIRREL1Q96J84 757 aa9.4□□□□□ -0.91
LIMCH1-203ENST00000396595 ELF4Q99607 663 aaPredicted RBP9.4□□□□□ -0.91
LIMCH1-203ENST00000396595 CXCL16Q9H2A7 254 aa9.4□□□□□ -0.91
LIMCH1-203ENST00000396595 TAF9BQ9HBM6 251 aa9.4□□□□□ -0.91
LIMCH1-203ENST00000396595 C19orf53Q9UNZ5 99 aaPredicted RBP9.4□□□□□ -0.91
LIMCH1-203ENST00000396595 G3V3Q6 166 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 HMGN4O00479 90 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 SOD1P00441 154 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 HPNP05981 417 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 SLC19A1P41440 591 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 RPL27P61353 136 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 SNRPEP62304 92 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 SLC16A13Q7RTY0 426 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 SYS1Q8N2H4 156 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 GJC3Q8NFK1 279 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 ARV1Q9H2C2 271 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 KIR3DX1Q9H7L2 352 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 UBTD1Q9HAC8 227 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 SLC25A19Q9HC21 320 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 NXT1Q9UKK6 140 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 RPH3ALQ9UNE2 315 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 C5P01031 1676 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 DCTN6O00399 190 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 TBX19O60806 448 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 ABHD16AO95870 558 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 RAB11AP62491 216 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 DGCR2P98153 550 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 ZNF92Q03936 586 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 AKR1C1Q04828 323 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 COL19A1Q14993 1142 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 TMEM88Q6PEY1 159 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 GRINAQ7Z429 371 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 CNEP1R1Q8N9A8 125 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 DCBLD2Q96PD2 775 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 ULBP3Q9BZM4 244 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 WWTR1Q9GZV5 400 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 TAS2R5Q9NYW4 299 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 CGGBP1Q9UFW8 167 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 C4AP0C0L4 1744 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 C4BP0C0L5 1744 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 FXYD1O00168 92 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 ST8SIA3O43173 380 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 RGPD1P0DJD0 1748 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 CD1EP15812 388 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 ZNF17P17021 662 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 EVX1P49640 407 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 SSR4P51571 173 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 METRNLQ641Q3 311 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 CAMKMTQ7Z624 323 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 LRRTM1Q86UE6 522 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 AGBL5Q8NDL9 886 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 BPIFCQ8NFQ6 507 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 OR6K3Q8NGY3 331 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 ZCCHC4Q9H5U6 513 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 AKIP1Q9NQ31 210 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 CHST2Q9Y4C5 530 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 ZNF320A2RRD8 509 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 GLSO94925 669 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 GABRB1P18505 474 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 CXCL12P48061 93 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 LIM2P55344 173 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 CLDN20P56880 219 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 SNTB1Q13884 538 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 TESK1Q15569 626 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 H1FNTQ75WM6 255 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 TCTEX1D1Q8N7M0 179 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 MS4A6EQ96DS6 147 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms