RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 SPTBN5Q9NRC6 3674 aaKnown RBP8.69□□□□□ -1.02
COL6A3-204ENST00000392003 PRR32B1ATL7 298 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 ZNF593O00488 134 aaPredicted RBP8.69□□□□□ -1.02
COL6A3-204ENST00000392003 FABP7O15540 132 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 SLC16A7O60669 478 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 ZP3P21754 424 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 DPP4P27487 766 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 RPS27P42677 84 aaKnown RBP8.69□□□□□ -1.02
COL6A3-204ENST00000392003 ACKR1Q16570 336 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 C1QL3Q5VWW1 255 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 SFRP4Q6FHJ7 346 aaPredicted RBP8.69□□□□□ -1.02
COL6A3-204ENST00000392003 LIN54Q6MZP7 749 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 FAM199XQ6PEV8 388 aaPredicted RBP8.69□□□□□ -1.02
COL6A3-204ENST00000392003 OR52I2Q8NH67 350 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 ZNF431Q8TF32 576 aaPredicted RBP8.69□□□□□ -1.02
COL6A3-204ENST00000392003 TMEM106AQ96A25 262 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 WBP1Q96G27 269 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 SLC41A2Q96JW4 573 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 SSX3Q99909 188 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 GAREM1Q9H706 876 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 GLRX2Q9NS18 164 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 B9D1Q9UPM9 204 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 RP1P56715 2156 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 PRSS37A4D1T9 235 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 METTL21EPA6NDL7 271 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 OR4C45A6NMZ5 311 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 ACOT7O00154 380 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 PDGFBP01127 241 aaPredicted RBP8.68□□□□□ -1.02
COL6A3-204ENST00000392003 MUC1P15941 1255 aaPredicted RBP8.68□□□□□ -1.02
COL6A3-204ENST00000392003 HOXC12P31275 282 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 KLF9Q13886 244 aaPredicted RBP8.68□□□□□ -1.02
COL6A3-204ENST00000392003 FAM74A1Q5RGS3 127 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 ETFRF1Q6IPR1 90 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 MISPQ8IVT2 679 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 OTOSQ8NHW6 89 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 NARS2Q96I59 477 aaKnown RBP8.68□□□□□ -1.02
COL6A3-204ENST00000392003 LURAP1Q96LR2 239 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 GUCD1Q96NT3 240 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 DPCDQ9BVM2 203 aaPredicted RBP8.68□□□□□ -1.02
COL6A3-204ENST00000392003 TXNIPQ9H3M7 391 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 OR5V1Q9UGF6 321 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 KCNG2Q9UJ96 466 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 LHX6Q9UPM6 363 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 WDR87Q6ZQQ6 2873 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 TRBV5-5A0A0J9YX44 114 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 H3BSH0 61 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 WRBO00258 174 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 MED6O75586 246 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 CFDP00746 253 aaPredicted RBP8.68□□□□□ -1.02
COL6A3-204ENST00000392003 FAUP35544 74 aaKnown RBP8.68□□□□□ -1.02
COL6A3-204ENST00000392003 EIF2S3P41091 472 aaKnown RBP8.68□□□□□ -1.02
COL6A3-204ENST00000392003 DEFA6Q01524 100 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 SLC25A25Q6KCM7 469 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 PWWP2BQ6NUJ5 590 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 UNQ6494/PRO21346Q6UXR6 183 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 FGD2Q7Z6J4 655 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 C9orf62Q8N4C0 152 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 PLPP5Q8NEB5 264 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 MAFAQ8NHW3 353 aaPredicted RBP8.68□□□□□ -1.02
COL6A3-204ENST00000392003 CEP76Q8TAP6 659 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 STK35Q8TDR2 534 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 RELTQ969Z4 430 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 MIB2Q96AX9 1013 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 FBXO17Q96EF6 278 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 KLHDC3Q9BQ90 382 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 RTN4RQ9BZR6 473 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 BIN3Q9NQY0 253 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 SLCO1C1Q9NYB5 712 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 TAS2R5Q9NYW4 299 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 PTTG3PQ9NZH4 202 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 RARRES3Q9UL19 164 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 ASCC3Q8N3C0 2202 aaKnown RBP8.68□□□□□ -1.02
COL6A3-204ENST00000392003 A0A1B0GTH9 108 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 A0A1B0GVI7 797 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 TCAPO15273 167 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 PRAF2O60831 178 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 BPNT1O95861 308 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 ABHD16AO95870 558 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 CD2P06729 351 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 ZNF823P16415 610 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 PSMB1P20618 241 aaKnown RBP8.68□□□□□ -1.02
COL6A3-204ENST00000392003 LAP3P28838 519 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 CRABP1P29762 137 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 SLC26A5P58743 744 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 EXOSC2Q13868 293 aaKnown RBP8.68□□□□□ -1.02
COL6A3-204ENST00000392003 GRK1Q15835 563 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 LPAL2Q16609 132 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 MEP1BQ16820 701 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 HLA-BQ31612 363 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 GUSBP11Q6P575 273 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 DNM1P34Q6PK57 102 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 LANCL3Q6ZV70 420 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 DND1Q8IYX4 353 aaKnown RBP8.68□□□□□ -1.02
COL6A3-204ENST00000392003 GPR119Q8TDV5 335 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 HAVCR1Q96D42 359 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 SLC25A38Q96DW6 304 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 PLEKHA1Q9HB21 404 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 BEX1Q9HBH7 125 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 HRASLSQ9HDD0 168 aa8.68□□□□□ -1.02
COL6A3-204ENST00000392003 CKLFQ9UBR5 152 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms