RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 CSAG2Q9Y5P2 127 aa11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 TBXA2RP21731 343 aa11.71□□□□□ -0.54
CCDC88C-204ENST00000389857 OR10A3P58181 314 aa11.71□□□□□ -0.54
CCDC88C-204ENST00000389857 GPR85P60893 370 aa11.71□□□□□ -0.54
CCDC88C-204ENST00000389857 ZNF511Q8NB15 262 aa11.71□□□□□ -0.54
CCDC88C-204ENST00000389857 OR51S1Q8NGJ8 323 aa11.71□□□□□ -0.54
CCDC88C-204ENST00000389857 YTHDF2Q9Y5A9 579 aaKnown RBP11.71□□□□□ -0.54
CCDC88C-204ENST00000389857 I6L893 689 aaPredicted RBP11.71□□□□□ -0.54
CCDC88C-204ENST00000389857 M0R1B8 84 aa11.71□□□□□ -0.54
CCDC88C-204ENST00000389857 FCN2Q15485 313 aa11.71□□□□□ -0.54
CCDC88C-204ENST00000389857 LILRA2Q8N149 483 aa11.71□□□□□ -0.54
CCDC88C-204ENST00000389857 UBQLN3Q9H347 655 aa11.71□□□□□ -0.54
CCDC88C-204ENST00000389857 SLC2A8Q9NY64 477 aa11.71□□□□□ -0.54
CCDC88C-204ENST00000389857 TAPBPO15533 448 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 IL2RAP01589 272 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 TEAD1P28347 426 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 OR10G3Q8NGC4 313 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 OR4F5Q8NH21 305 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 OR4F4Q96R69 305 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 FAM96BQ9Y3D0 163 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 SSSCA1O60232 199 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 CYC1P08574 325 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 TGM1P22735 817 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 RPS19BP1Q86WX3 136 aaKnown RBP11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 UBAC2Q8NBM4 344 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 RPL3LQ92901 407 aaKnown RBP11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 SLC25A46Q96AG3 418 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 CGGBP1Q9UFW8 167 aaPredicted RBP11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 TNFRSF10CO14798 259 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 CPEP16870 476 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 CD1CP29017 333 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 ZNF90Q03938 601 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 CGB2Q6NT52 195 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 PTRH1Q86Y79 214 aaKnown RBP11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 SIGLECL1Q8N7X8 197 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 SLC38A9Q8NBW4 561 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 OR13F1Q8NGS4 319 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 HRH3Q9Y5N1 445 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 URGCP-MRPS24S4R325 110 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 J3QR89 54 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 PPIAP62937 165 aaKnown RBP11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 EGR3Q06889 387 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 SLC24A4Q8NFF2 622 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 ISL2Q96A47 359 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 ELSPBP1Q96BH3 223 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 SMIM14Q96QK8 99 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 NIPSNAP1Q9BPW8 284 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 C1QTNF3Q9BXJ4 246 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 TMPRSS5Q9H3S3 457 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 CCL26Q9Y258 94 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 TMEM235A6NFC5 223 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 XRCC2O43543 280 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 PLRG1O43660 514 aaKnown RBP11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 GIPP09681 153 aaPredicted RBP11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 SAXO2Q658L1 398 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 FAM71E1Q6IPT2 247 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 LSMEM2Q8N112 164 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 PGBD5Q8N414 524 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 ZNF740Q8NDX6 193 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 OR13H1Q8NG92 308 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 OR10R2Q8NGX6 335 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 AKR1E2Q96JD6 320 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 OPALINQ96PE5 141 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 CIB3Q96Q77 187 aaPredicted RBP11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 DUSP22Q9NRW4 184 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 NDUFB11Q9NX14 153 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 OR2F2O95006 317 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 QDPRP09417 244 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 APEHP13798 732 aaKnown RBP11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 ETV1P50549 477 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 ERVFC1P60507 584 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 OR5I1Q13606 314 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 OR2F1Q13607 317 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 ZNF628Q5EBL2 1059 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 PLPP6Q8IY26 295 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 NKX6-2Q9C056 277 aaPredicted RBP11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 CRYBG1Q9Y4K1 1723 aa11.7□□□□□ -0.54
CCDC88C-204ENST00000389857 SPI1P17947 270 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 ZNF239Q16600 458 aaKnown RBP11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 DND1Q8IYX4 353 aaKnown RBP11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 NANOGP1Q8N7R0 232 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 OR10P1Q8NGE3 313 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 CCDC74AQ96AQ1 378 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 ZNF2Q9BSG1 426 aaPredicted RBP11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 SEMA4CQ9C0C4 833 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 ZBP1Q9H171 429 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 SLC17A4Q9Y2C5 497 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 FLVCR1Q9Y5Y0 555 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 ARL2-SNX15V9GYD0 113 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 HSPB2A8KAH6 182 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 OR5G3P0C626 314 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 NID1P14543 1247 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 SOX18P35713 384 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 RPS16P62249 146 aaKnown RBP11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 HSPB2Q16082 182 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 DUSP6Q16828 381 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 METRNLQ641Q3 311 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 LSRQ86X29 649 aaPredicted RBP11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 LURAP1Q96LR2 239 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 ZNF576Q9H609 170 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms