RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 PIPOXQ9P0Z9 390 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 B3GALT1Q9Y5Z6 326 aa11.95□□□□□ -0.5
CCDC3-202ENST00000378839 HSPB2A8KAH6 182 aa11.94□□□□□ -0.5
CCDC3-202ENST00000378839 ECDO95905 644 aaPredicted RBP11.94□□□□□ -0.5
CCDC3-202ENST00000378839 PDGFBP01127 241 aaPredicted RBP11.94□□□□□ -0.5
CCDC3-202ENST00000378839 SSTR2P30874 369 aa11.94□□□□□ -0.5
CCDC3-202ENST00000378839 RIDAP52758 137 aaKnown RBP11.94□□□□□ -0.5
CCDC3-202ENST00000378839 HSPB2Q16082 182 aa11.94□□□□□ -0.5
CCDC3-202ENST00000378839 HLA-BQ31612 363 aa11.94□□□□□ -0.5
CCDC3-202ENST00000378839 PLPPR5Q32ZL2 321 aa11.94□□□□□ -0.5
CCDC3-202ENST00000378839 GLRX5Q86SX6 157 aa11.94□□□□□ -0.5
CCDC3-202ENST00000378839 MISPQ8IVT2 679 aa11.94□□□□□ -0.5
CCDC3-202ENST00000378839 TMEM234Q8WY98 164 aa11.94□□□□□ -0.5
CCDC3-202ENST00000378839 C5orf34Q96MH7 638 aa11.94□□□□□ -0.5
CCDC3-202ENST00000378839 CHST11Q9NPF2 352 aa11.94□□□□□ -0.5
CCDC3-202ENST00000378839 MYOTQ9UBF9 498 aa11.94□□□□□ -0.5
CCDC3-202ENST00000378839 KIF26BQ2KJY2 2108 aa11.94□□□□□ -0.5
CCDC3-202ENST00000378839 WIPF3A6NGB9 483 aa11.94□□□□□ -0.5
CCDC3-202ENST00000378839 H7C417 338 aa11.94□□□□□ -0.5
CCDC3-202ENST00000378839 PYCARD-AS1I3L0S3 204 aa11.94□□□□□ -0.5
CCDC3-202ENST00000378839 ETV2O00321 342 aaPredicted RBP11.94□□□□□ -0.5
CCDC3-202ENST00000378839 SLC17A2O00624 439 aa11.94□□□□□ -0.5
CCDC3-202ENST00000378839 TMEM127O75204 238 aa11.94□□□□□ -0.5
CCDC3-202ENST00000378839 APOBEC1P41238 236 aaKnown RBP11.94□□□□□ -0.5
CCDC3-202ENST00000378839 ACY1Q03154 408 aa11.94□□□□□ -0.5
CCDC3-202ENST00000378839 TLE3Q04726 772 aa11.94□□□□□ -0.5
CCDC3-202ENST00000378839 SNTA1Q13424 505 aa11.94□□□□□ -0.5
CCDC3-202ENST00000378839 NR0B2Q15466 257 aa11.94□□□□□ -0.5
CCDC3-202ENST00000378839 C2orf68Q2NKX9 166 aa11.94□□□□□ -0.5
CCDC3-202ENST00000378839 OR10K2Q6IF99 312 aa11.94□□□□□ -0.5
CCDC3-202ENST00000378839 SLC25A25Q6KCM7 469 aa11.94□□□□□ -0.5
CCDC3-202ENST00000378839 RNF144BQ7Z419 303 aa11.94□□□□□ -0.5
CCDC3-202ENST00000378839 LYPD6Q86Y78 171 aa11.94□□□□□ -0.5
CCDC3-202ENST00000378839 DVL3Q92997 716 aaPredicted RBP11.94□□□□□ -0.5
CCDC3-202ENST00000378839 MRI1Q9BV20 369 aa11.94□□□□□ -0.5
CCDC3-202ENST00000378839 ZNF436Q9C0F3 470 aaPredicted RBP11.94□□□□□ -0.5
CCDC3-202ENST00000378839 MTFP1Q9UDX5 166 aa11.94□□□□□ -0.5
CCDC3-202ENST00000378839 DHDHQ9UQ10 334 aa11.94□□□□□ -0.5
CCDC3-202ENST00000378839 R4GMQ9 66 aa11.94□□□□□ -0.5
CCDC3-202ENST00000378839 TRAV18A0A075B6X5 111 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 NPIPA5E9PKD4 350 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 EIF1AYO14602 144 aaKnown RBP11.93□□□□□ -0.5
CCDC3-202ENST00000378839 TGM6O95932 706 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 CD37P11049 281 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 CRABP1P29762 137 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 MYBPHQ13203 477 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 PCGF3Q3KNV8 242 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 MOGAT2Q3SYC2 334 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 TOR2AQ5JU69 321 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 LYSMD4Q5XG99 296 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 LRFN4Q6PJG9 635 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 FGD2Q7Z6J4 655 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 OR4C16Q8NGL9 310 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 CYYR1Q96J86 154 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 KLRF1Q9NZS2 232 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 NPIPA1Q9UND3 350 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 PHF3Q92576 2039 aaKnown RBP11.93□□□□□ -0.5
CCDC3-202ENST00000378839 A0A1W2PNR3 127 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 MASP2O00187 686 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 MPC2O95563 127 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 PNLIPP16233 465 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 BIDP55957 195 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 PER3P56645 1201 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 SPOCK1Q08629 439 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 RAB11BQ15907 218 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 GLYATL3Q5SZD4 288 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 GLDNQ6ZMI3 551 aaPredicted RBP11.93□□□□□ -0.5
CCDC3-202ENST00000378839 EID2Q8N6I1 236 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 ACTR6Q9GZN1 396 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 SERINC1Q9NRX5 453 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 RARRES3Q9UL19 164 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 ING4Q9UNL4 249 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 EML6Q6ZMW3 1958 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 TNRC6BQ9UPQ9 1833 aaKnown RBP11.93□□□□□ -0.5
CCDC3-202ENST00000378839 DCDC2BA2VCK2 349 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 NDUFB6O95139 128 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 KCTD18Q6PI47 426 aaPredicted RBP11.93□□□□□ -0.5
CCDC3-202ENST00000378839 RTN4RL2Q86UN3 420 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 WDSUB1Q8N9V3 476 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 MAFAQ8NHW3 353 aaPredicted RBP11.93□□□□□ -0.5
CCDC3-202ENST00000378839 C11orf40Q8WZ69 217 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 UTP23Q9BRU9 249 aaKnown RBP11.93□□□□□ -0.5
CCDC3-202ENST00000378839 CRB3Q9BUF7 120 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 MRPL13Q9BYD1 178 aaKnown RBP11.93□□□□□ -0.5
CCDC3-202ENST00000378839 CHIAQ9BZP6 476 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 KLHL13Q9P2N7 655 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 PILRBQ9UKJ0 227 aa11.93□□□□□ -0.5
CCDC3-202ENST00000378839 LOC100289279A0A1B0GTE1 492 aa11.92□□□□□ -0.5
CCDC3-202ENST00000378839 A0A1B0GUH1 482 aa11.92□□□□□ -0.5
CCDC3-202ENST00000378839 LOC107986453A0A1B0GWG9 222 aa11.92□□□□□ -0.5
CCDC3-202ENST00000378839 P2RY10O00398 339 aa11.92□□□□□ -0.5
CCDC3-202ENST00000378839 ZNF208O43345 1280 aa11.92□□□□□ -0.5
CCDC3-202ENST00000378839 LDOC1O95751 146 aaPredicted RBP11.92□□□□□ -0.5
CCDC3-202ENST00000378839 ENPP1P22413 925 aa11.92□□□□□ -0.5
CCDC3-202ENST00000378839 EIF1AXP47813 144 aaKnown RBP11.92□□□□□ -0.5
CCDC3-202ENST00000378839 OR6S1Q8NH40 331 aa11.92□□□□□ -0.5
CCDC3-202ENST00000378839 SLC25A44Q96H78 314 aaPredicted RBP11.92□□□□□ -0.5
CCDC3-202ENST00000378839 DHRS9Q9BPW9 319 aa11.92□□□□□ -0.5
CCDC3-202ENST00000378839 RANBP3Q9H6Z4 567 aaPredicted RBP11.92□□□□□ -0.5
CCDC3-202ENST00000378839 OR52A1Q9UKL2 312 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms