RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 ZNF823P16415 610 aa10.91□□□□□ -0.66
CLIP3-201ENST00000360535 HSD17B7P56937 341 aa10.91□□□□□ -0.66
CLIP3-201ENST00000360535 DCXRQ7Z4W1 244 aa10.91□□□□□ -0.66
CLIP3-201ENST00000360535 ZSCAN1Q8NBB4 408 aa10.91□□□□□ -0.66
CLIP3-201ENST00000360535 WNT2BQ93097 391 aa10.91□□□□□ -0.66
CLIP3-201ENST00000360535 PDE7BQ9NP56 450 aa10.91□□□□□ -0.66
CLIP3-201ENST00000360535 EXOSC3Q9NQT5 275 aaKnown RBP10.91□□□□□ -0.66
CLIP3-201ENST00000360535 ZNF275Q9NSD4 429 aaPredicted RBP10.91□□□□□ -0.66
CLIP3-201ENST00000360535 MED29Q9NX70 200 aa10.91□□□□□ -0.66
CLIP3-201ENST00000360535 WDFY3Q8IZQ1 3526 aa10.91□□□□□ -0.66
CLIP3-201ENST00000360535 H3BML4 177 aa10.91□□□□□ -0.66
CLIP3-201ENST00000360535 CLPSP04118 112 aa10.91□□□□□ -0.66
CLIP3-201ENST00000360535 CAPZA1P52907 286 aa10.91□□□□□ -0.66
CLIP3-201ENST00000360535 TAS2R19P59542 299 aa10.91□□□□□ -0.66
CLIP3-201ENST00000360535 RPL27P61353 136 aaKnown RBP10.91□□□□□ -0.66
CLIP3-201ENST00000360535 STK11Q15831 433 aa10.91□□□□□ -0.66
CLIP3-201ENST00000360535 ISXQ2M1V0 245 aa10.91□□□□□ -0.66
CLIP3-201ENST00000360535 ZNF584Q8IVC4 421 aa10.91□□□□□ -0.66
CLIP3-201ENST00000360535 BVESQ8NE79 360 aa10.91□□□□□ -0.66
CLIP3-201ENST00000360535 CCDC107Q8WV48 283 aa10.91□□□□□ -0.66
CLIP3-201ENST00000360535 SLC41A2Q96JW4 573 aa10.91□□□□□ -0.66
CLIP3-201ENST00000360535 WDR13Q9H1Z4 485 aa10.91□□□□□ -0.66
CLIP3-201ENST00000360535 URB1O60287 2271 aaKnown RBP10.9□□□□□ -0.66
CLIP3-201ENST00000360535 VPS13AQ96RL7 3174 aa10.9□□□□□ -0.66
CLIP3-201ENST00000360535 TMED7-TICAM2A0A0A6YYA0 188 aa10.9□□□□□ -0.66
CLIP3-201ENST00000360535 TMEM269A0A1B0GVZ9 245 aa10.9□□□□□ -0.66
CLIP3-201ENST00000360535 D6RAR5 112 aa10.9□□□□□ -0.66
CLIP3-201ENST00000360535 CSF2RBP32927 897 aa10.9□□□□□ -0.66
CLIP3-201ENST00000360535 PPICP45877 212 aa10.9□□□□□ -0.66
CLIP3-201ENST00000360535 EPHA4P54764 986 aa10.9□□□□□ -0.66
CLIP3-201ENST00000360535 ACTBP60709 375 aa10.9□□□□□ -0.66
CLIP3-201ENST00000360535 ACTG1P63261 375 aa10.9□□□□□ -0.66
CLIP3-201ENST00000360535 PMPCAQ10713 525 aa10.9□□□□□ -0.66
CLIP3-201ENST00000360535 DHRS2Q13268 280 aa10.9□□□□□ -0.66
CLIP3-201ENST00000360535 KCTD18Q6PI47 426 aaPredicted RBP10.9□□□□□ -0.66
CLIP3-201ENST00000360535 FAM131CQ96AQ9 280 aa10.9□□□□□ -0.66
CLIP3-201ENST00000360535 FGGYQ96C11 551 aa10.9□□□□□ -0.66
CLIP3-201ENST00000360535 TCTN2Q96GX1 697 aa10.9□□□□□ -0.66
CLIP3-201ENST00000360535 CYYR1Q96J86 154 aa10.9□□□□□ -0.66
CLIP3-201ENST00000360535 EVA1AQ9H8M9 152 aa10.9□□□□□ -0.66
CLIP3-201ENST00000360535 TMED7Q9Y3B3 224 aa10.9□□□□□ -0.66
CLIP3-201ENST00000360535 KANTRA0A1W2PQU2 76 aa10.9□□□□□ -0.66
CLIP3-201ENST00000360535 FAM221BA6H8Z2 402 aa10.9□□□□□ -0.66
CLIP3-201ENST00000360535 C5orf51A6NDU8 294 aa10.9□□□□□ -0.66
CLIP3-201ENST00000360535 B3GALNT1O75752 331 aa10.9□□□□□ -0.66
CLIP3-201ENST00000360535 ATP1B3P54709 279 aa10.9□□□□□ -0.66
CLIP3-201ENST00000360535 ATPAF1Q5TC12 328 aaPredicted RBP10.9□□□□□ -0.66
CLIP3-201ENST00000360535 TMEM185AQ8NFB2 350 aa10.9□□□□□ -0.66
CLIP3-201ENST00000360535 PXT1Q8NFP0 134 aa10.9□□□□□ -0.66
CLIP3-201ENST00000360535 OR4D6Q8NGJ1 314 aa10.9□□□□□ -0.66
CLIP3-201ENST00000360535 ST8SIA2Q92186 375 aa10.9□□□□□ -0.66
CLIP3-201ENST00000360535 ZBTB8AQ96BR9 441 aa10.9□□□□□ -0.66
CLIP3-201ENST00000360535 VRK1Q99986 396 aaPredicted RBP10.9□□□□□ -0.66
CLIP3-201ENST00000360535 PRR13Q9NZ81 148 aa10.9□□□□□ -0.66
CLIP3-201ENST00000360535 UPB1Q9UBR1 384 aa10.9□□□□□ -0.66
CLIP3-201ENST00000360535 MKL2Q9ULH7 1088 aa10.9□□□□□ -0.66
CLIP3-201ENST00000360535 PLCL2Q9UPR0 1127 aa10.9□□□□□ -0.66
CLIP3-201ENST00000360535 TRAV36DV7A0A075B6V5 113 aa10.9□□□□□ -0.67
CLIP3-201ENST00000360535 TRAV14DV4A0A0A6YYC5 116 aa10.9□□□□□ -0.67
CLIP3-201ENST00000360535 LOC107986453A0A1B0GWG9 222 aa10.9□□□□□ -0.67
CLIP3-201ENST00000360535 HMSDA8MTL9 139 aa10.9□□□□□ -0.67
CLIP3-201ENST00000360535 BGLAPP02818 100 aa10.9□□□□□ -0.67
CLIP3-201ENST00000360535 SLC2A1P11166 492 aa10.9□□□□□ -0.67
CLIP3-201ENST00000360535 GLULP15104 373 aa10.9□□□□□ -0.67
CLIP3-201ENST00000360535 OR7A5Q15622 319 aa10.9□□□□□ -0.67
CLIP3-201ENST00000360535 FNDC7Q5VTL7 733 aa10.9□□□□□ -0.67
CLIP3-201ENST00000360535 ARHGEF39Q8N4T4 335 aa10.9□□□□□ -0.67
CLIP3-201ENST00000360535 OR5M9Q8NGP3 310 aa10.9□□□□□ -0.67
CLIP3-201ENST00000360535 GPX8Q8TED1 209 aa10.9□□□□□ -0.67
CLIP3-201ENST00000360535 ASB12Q8WXK4 309 aa10.9□□□□□ -0.67
CLIP3-201ENST00000360535 C5orf34Q96MH7 638 aa10.9□□□□□ -0.67
CLIP3-201ENST00000360535 TMPRSS13Q9BYE2 586 aa10.9□□□□□ -0.67
CLIP3-201ENST00000360535 KRBOX1C9JBD0 128 aa10.89□□□□□ -0.67
CLIP3-201ENST00000360535 F5H0A9 414 aaPredicted RBP10.89□□□□□ -0.67
CLIP3-201ENST00000360535 LBX1P52954 281 aa10.89□□□□□ -0.67
CLIP3-201ENST00000360535 DHODHQ02127 395 aa10.89□□□□□ -0.67
CLIP3-201ENST00000360535 SERTAD2Q14140 314 aa10.89□□□□□ -0.67
CLIP3-201ENST00000360535 LY6G6FQ5SQ64 297 aa10.89□□□□□ -0.67
CLIP3-201ENST00000360535 ZNF248Q8NDW4 579 aa10.89□□□□□ -0.67
CLIP3-201ENST00000360535 RNF128Q8TEB7 428 aa10.89□□□□□ -0.67
CLIP3-201ENST00000360535 PPP1R1CQ8WVI7 109 aa10.89□□□□□ -0.67
CLIP3-201ENST00000360535 CUTCQ9NTM9 273 aa10.89□□□□□ -0.67
CLIP3-201ENST00000360535 KLK13Q9UKR3 277 aa10.89□□□□□ -0.67
CLIP3-201ENST00000360535 HS3ST3A1Q9Y663 406 aa10.89□□□□□ -0.67
CLIP3-201ENST00000360535 MYO7BQ6PIF6 2116 aa10.89□□□□□ -0.67
CLIP3-201ENST00000360535 TRIM77I1YAP6 450 aa10.89□□□□□ -0.67
CLIP3-201ENST00000360535 AHSA1O95433 338 aa10.89□□□□□ -0.67
CLIP3-201ENST00000360535 DLSTP36957 453 aa10.89□□□□□ -0.67
CLIP3-201ENST00000360535 RNASE10Q5GAN6 216 aaKnown RBP10.89□□□□□ -0.67
CLIP3-201ENST00000360535 C1orf140Q5VVS0 124 aa10.89□□□□□ -0.67
CLIP3-201ENST00000360535 LANCL3Q6ZV70 420 aa10.89□□□□□ -0.67
CLIP3-201ENST00000360535 TRAPPC6BQ86SZ2 158 aa10.89□□□□□ -0.67
CLIP3-201ENST00000360535 DPYSL5Q9BPU6 564 aa10.89□□□□□ -0.67
CLIP3-201ENST00000360535 SHARPINQ9H0F6 387 aa10.89□□□□□ -0.67
CLIP3-201ENST00000360535 SEC61A2Q9H9S3 476 aa10.89□□□□□ -0.67
CLIP3-201ENST00000360535 EPHA6Q9UF33 1036 aa10.89□□□□□ -0.67
CLIP3-201ENST00000360535 RFPL4AA6NLU0 287 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 RFPL4AL1F8VTS6 287 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 GNB3P16520 340 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 PI3P19957 117 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms