RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 PSMB1P20618 241 aaKnown RBP3.5□□□□□ -1.85
LIG4-201ENST00000356922 SLC25A1P53007 311 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 RAP1BP61224 184 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 RAB1AP62820 205 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 RAP1AP62834 184 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 MRPS34P82930 218 aaKnown RBP3.5□□□□□ -1.85
LIG4-201ENST00000356922 TGFBR3Q03167 851 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 ZNF91Q05481 1191 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 PCK2Q16822 640 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 FBXL19-AS1Q494R0 122 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 CCDC92Q53HC0 331 aaPredicted RBP3.5□□□□□ -1.85
LIG4-201ENST00000356922 SLC25A30Q5SVS4 291 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 C6orf141Q5SZD1 244 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 FAM27BQ5VT28 67 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 BEND4Q6ZU67 534 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 LHFPL3Q86UP9 236 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 MDP1Q86V88 176 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 ERI1Q8IV48 349 aaKnown RBP3.5□□□□□ -1.85
LIG4-201ENST00000356922 ZNF101Q8IZC7 436 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 OR10H5Q8NGA6 315 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 DNAJC9Q8WXX5 260 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 HSD17B8Q92506 261 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 ZFP3Q96NJ6 502 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 RDH12Q96NR8 316 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 WNT5BQ9H1J7 359 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 ISG20L2Q9H9L3 353 aaKnown RBP3.5□□□□□ -1.85
LIG4-201ENST00000356922 SIAEQ9HAT2 523 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 DPRXA6NFQ7 191 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 OR5H1A6NKK0 313 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 E9PI62 339 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 C16orf97H3BN30 126 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 GLCEO94923 617 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 FARS2O95363 451 aaKnown RBP3.5□□□□□ -1.85
LIG4-201ENST00000356922 PNPP00491 289 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 SBK2P0C263 348 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 PRF1P14222 555 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 CCNOP22674 350 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 APEX1P27695 318 aaKnown RBP3.5□□□□□ -1.85
LIG4-201ENST00000356922 LOXP28300 417 aaPredicted RBP3.5□□□□□ -1.85
LIG4-201ENST00000356922 CALCRP30988 508 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 ETV1P50549 477 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 CDH11P55287 796 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 CDC42P60953 191 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 UBE2NP61088 152 aaKnown RBP3.5□□□□□ -1.85
LIG4-201ENST00000356922 ZNF85Q03923 595 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 RAB39AQ14964 217 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 OCLNQ16625 522 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 TTC23Q5W5X9 447 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 KRT80Q6KB66 452 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 SLC18B1Q6NT16 456 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 ANKRD16Q6P6B7 361 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 BHLHA15Q7RTS1 189 aaPredicted RBP3.5□□□□□ -1.85
LIG4-201ENST00000356922 HDDC2Q7Z4H3 204 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 THAP5Q7Z6K1 395 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 RACGAP1Q9H0H5 632 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 PPP1R3EQ9H7J1 279 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 MARCH7Q9H992 704 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 TMEM165Q9HC07 324 aa3.5□□□□□ -1.85
LIG4-201ENST00000356922 NIPBLQ6KC79 2804 aaeCLIP3.5□□□□□ -1.85
LIG4-201ENST00000356922 PRODHO43272 600 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 AHCYL1O43865 530 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 KHDRBS3O75525 346 aaKnown RBP3.49□□□□□ -1.85
LIG4-201ENST00000356922 RPSAP08865 295 aaKnown RBP3.49□□□□□ -1.85
LIG4-201ENST00000356922 LIMS3P0CW19 117 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 LIMS4P0CW20 117 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 SLC2A1P11166 492 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 EPXP11678 715 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 CD79AP11912 226 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 NR2C1P13056 603 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 ZNF14P17017 642 aaPredicted RBP3.49□□□□□ -1.85
LIG4-201ENST00000356922 ALOX5APP20292 161 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 HTR1FP30939 366 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 MAGEB1P43366 347 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 MTNR1AP48039 350 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 ZNF83P51522 516 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 CXCR4P61073 352 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 ERVS71-1P61550 626 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 ADAM8P78325 824 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 GLO1Q04760 184 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 P2RY6Q15077 328 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 TAF13Q15543 124 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 DMRTC1Q5HYR2 192 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 PABPC1L2AQ5JQF8 200 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 ZNF684Q5T5D7 378 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 OR2G6Q5TZ20 316 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 XKRXQ6PP77 449 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 DCXRQ7Z4W1 244 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 ABHD12BQ7Z5M8 362 aaPredicted RBP3.49□□□□□ -1.85
LIG4-201ENST00000356922 C8orf59Q8N0T1 100 aaPredicted RBP3.49□□□□□ -1.85
LIG4-201ENST00000356922 ZNF808Q8N4W9 903 aaPredicted RBP3.49□□□□□ -1.85
LIG4-201ENST00000356922 ACBD4Q8NC06 268 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 OR52I1Q8NGK6 324 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 OR2T4Q8NH00 348 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 LILRB1Q8NHL6 650 aaPredicted RBP3.49□□□□□ -1.85
LIG4-201ENST00000356922 TRUB1Q8WWH5 349 aaKnown RBP3.49□□□□□ -1.85
LIG4-201ENST00000356922 MUCL1Q96DR8 90 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 RNFT2Q96EX2 444 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 SIGLEC11Q96RL6 698 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 APOL4Q9BPW4 351 aa3.49□□□□□ -1.85
LIG4-201ENST00000356922 MED18Q9BUE0 208 aa3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms