RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 SERINC1Q9NRX5 453 aa13.79□□□□□ -0.2
UPF3B-202ENST00000345865 OCIAD1Q9NX40 245 aa13.79□□□□□ -0.2
UPF3B-202ENST00000345865 SCP2D1Q9UJQ7 156 aa13.79□□□□□ -0.2
UPF3B-202ENST00000345865 ELF5Q9UKW6 265 aaPredicted RBP13.79□□□□□ -0.2
UPF3B-202ENST00000345865 LOC107986453A0A1B0GWG9 222 aa13.79□□□□□ -0.2
UPF3B-202ENST00000345865 DCDC2BA2VCK2 349 aa13.79□□□□□ -0.2
UPF3B-202ENST00000345865 CD37P11049 281 aa13.79□□□□□ -0.2
UPF3B-202ENST00000345865 BIDP55957 195 aa13.79□□□□□ -0.2
UPF3B-202ENST00000345865 GNG2P59768 71 aa13.79□□□□□ -0.2
UPF3B-202ENST00000345865 MYBPHQ13203 477 aa13.79□□□□□ -0.2
UPF3B-202ENST00000345865 MFSD13AQ14CX5 517 aa13.79□□□□□ -0.2
UPF3B-202ENST00000345865 TEX261Q6UWH6 196 aa13.79□□□□□ -0.2
UPF3B-202ENST00000345865 TTC9Q92623 222 aa13.79□□□□□ -0.2
UPF3B-202ENST00000345865 C5orf34Q96MH7 638 aa13.79□□□□□ -0.2
UPF3B-202ENST00000345865 GAL3ST1Q99999 423 aa13.79□□□□□ -0.2
UPF3B-202ENST00000345865 CRB3Q9BUF7 120 aa13.79□□□□□ -0.2
UPF3B-202ENST00000345865 CHIAQ9BZP6 476 aa13.79□□□□□ -0.2
UPF3B-202ENST00000345865 DIABLOQ9NR28 239 aa13.79□□□□□ -0.2
UPF3B-202ENST00000345865 PIPOXQ9P0Z9 390 aa13.79□□□□□ -0.2
UPF3B-202ENST00000345865 PPP4R1LQ9P1A2 415 aa13.79□□□□□ -0.2
UPF3B-202ENST00000345865 MYEF2Q9P2K5 600 aaKnown RBP13.79□□□□□ -0.2
UPF3B-202ENST00000345865 FBXL2Q9UKC9 423 aa13.79□□□□□ -0.2
UPF3B-202ENST00000345865 OR52A1Q9UKL2 312 aa13.79□□□□□ -0.2
UPF3B-202ENST00000345865 U3KQ87 197 aa13.79□□□□□ -0.2
UPF3B-202ENST00000345865 TMEM269A0A1B0GVZ9 245 aa13.78□□□□□ -0.2
UPF3B-202ENST00000345865 A0A1W2PQ72 361 aa13.78□□□□□ -0.2
UPF3B-202ENST00000345865 EIF1AYO14602 144 aaKnown RBP13.78□□□□□ -0.2
UPF3B-202ENST00000345865 TPOP07202 933 aa13.78□□□□□ -0.2
UPF3B-202ENST00000345865 VSIG10L2P0DP72 767 aa13.78□□□□□ -0.2
UPF3B-202ENST00000345865 FSTP19883 344 aa13.78□□□□□ -0.2
UPF3B-202ENST00000345865 HTR2CP28335 458 aa13.78□□□□□ -0.2
UPF3B-202ENST00000345865 MECP2P51608 486 aaKnown RBP13.78□□□□□ -0.2
UPF3B-202ENST00000345865 SPOCK1Q08629 439 aa13.78□□□□□ -0.2
UPF3B-202ENST00000345865 DUSP23Q9BVJ7 150 aa13.78□□□□□ -0.2
UPF3B-202ENST00000345865 ATG5Q9H1Y0 275 aa13.78□□□□□ -0.2
UPF3B-202ENST00000345865 PTTG3PQ9NZH4 202 aa13.78□□□□□ -0.2
UPF3B-202ENST00000345865 HHLA2Q9UM44 414 aa13.78□□□□□ -0.2
UPF3B-202ENST00000345865 NPIPB13A6NJU9 1138 aa13.78□□□□□ -0.2
UPF3B-202ENST00000345865 NPIPB4C9JG80 1138 aa13.78□□□□□ -0.2
UPF3B-202ENST00000345865 AQP8O94778 261 aa13.78□□□□□ -0.2
UPF3B-202ENST00000345865 ISG15P05161 165 aa13.78□□□□□ -0.2
UPF3B-202ENST00000345865 CD2P06729 351 aa13.78□□□□□ -0.2
UPF3B-202ENST00000345865 NAGAP17050 411 aa13.78□□□□□ -0.2
UPF3B-202ENST00000345865 OR13C3Q8NGS6 347 aa13.78□□□□□ -0.2
UPF3B-202ENST00000345865 C11orf40Q8WZ69 217 aa13.78□□□□□ -0.2
UPF3B-202ENST00000345865 DVL3Q92997 716 aaPredicted RBP13.78□□□□□ -0.2
UPF3B-202ENST00000345865 SORCS2Q96PQ0 1159 aa13.78□□□□□ -0.2
UPF3B-202ENST00000345865 SLX1AQ9BQ83 275 aa13.78□□□□□ -0.2
UPF3B-202ENST00000345865 POTEKPQ9BYX7 375 aa13.78□□□□□ -0.2
UPF3B-202ENST00000345865 IRF2BPLQ9H1B7 796 aa13.78□□□□□ -0.2
UPF3B-202ENST00000345865 CENPMQ9NSP4 180 aa13.78□□□□□ -0.2
UPF3B-202ENST00000345865 ZNF69Q9UC07 566 aa13.78□□□□□ -0.2
UPF3B-202ENST00000345865 CDV3Q9UKY7 258 aaKnown RBP13.78□□□□□ -0.2
UPF3B-202ENST00000345865 B3GALT1Q9Y5Z6 326 aa13.78□□□□□ -0.2
UPF3B-202ENST00000345865 TMEM265A0A087WTH1 108 aa13.77□□□□□ -0.21
UPF3B-202ENST00000345865 ZNF814B7Z6K7 855 aa13.77□□□□□ -0.21
UPF3B-202ENST00000345865 P2RY10O00398 339 aa13.77□□□□□ -0.21
UPF3B-202ENST00000345865 MPC2O95563 127 aa13.77□□□□□ -0.21
UPF3B-202ENST00000345865 ONECUT2O95948 504 aa13.77□□□□□ -0.21
UPF3B-202ENST00000345865 EIF1AXP47813 144 aaKnown RBP13.77□□□□□ -0.21
UPF3B-202ENST00000345865 P2RY4P51582 365 aa13.77□□□□□ -0.21
UPF3B-202ENST00000345865 HLA-BQ31612 363 aa13.77□□□□□ -0.21
UPF3B-202ENST00000345865 SLC25A53Q5H9E4 307 aa13.77□□□□□ -0.21
UPF3B-202ENST00000345865 ZNF626Q68DY1 528 aa13.77□□□□□ -0.21
UPF3B-202ENST00000345865 OR10K2Q6IF99 312 aa13.77□□□□□ -0.21
UPF3B-202ENST00000345865 DNM1P34Q6PK57 102 aa13.77□□□□□ -0.21
UPF3B-202ENST00000345865 SLC36A1Q7Z2H8 476 aa13.77□□□□□ -0.21
UPF3B-202ENST00000345865 LYPD6Q86Y78 171 aa13.77□□□□□ -0.21
UPF3B-202ENST00000345865 ZNF680Q8NEM1 530 aa13.77□□□□□ -0.21
UPF3B-202ENST00000345865 OR5L2Q8NGL0 311 aa13.77□□□□□ -0.21
UPF3B-202ENST00000345865 OR10S1Q8NGN2 331 aa13.77□□□□□ -0.21
UPF3B-202ENST00000345865 OR2I1PQ8NGU4 316 aa13.77□□□□□ -0.21
UPF3B-202ENST00000345865 RNF133Q8WVZ7 376 aa13.77□□□□□ -0.21
UPF3B-202ENST00000345865 CITED4Q96RK1 184 aa13.77□□□□□ -0.21
UPF3B-202ENST00000345865 MRPL13Q9BYD1 178 aaKnown RBP13.77□□□□□ -0.21
UPF3B-202ENST00000345865 FANCFQ9NPI8 374 aa13.77□□□□□ -0.21
UPF3B-202ENST00000345865 ALKBH4Q9NXW9 302 aa13.77□□□□□ -0.21
UPF3B-202ENST00000345865 KLHL13Q9P2N7 655 aa13.77□□□□□ -0.21
UPF3B-202ENST00000345865 MGAT4CQ9UBM8 478 aa13.77□□□□□ -0.21
UPF3B-202ENST00000345865 EIF3KQ9UBQ5 218 aaKnown RBP13.77□□□□□ -0.21
UPF3B-202ENST00000345865 CKLFQ9UBR5 152 aa13.77□□□□□ -0.21
UPF3B-202ENST00000345865 B3GALT5Q9Y2C3 310 aa13.77□□□□□ -0.21
UPF3B-202ENST00000345865 RHBDD3Q9Y3P4 386 aa13.77□□□□□ -0.21
UPF3B-202ENST00000345865 WIF1Q9Y5W5 379 aa13.77□□□□□ -0.21
UPF3B-202ENST00000345865 A0A1W2PNR3 127 aa13.76□□□□□ -0.21
UPF3B-202ENST00000345865 ZFAND5O76080 213 aa13.76□□□□□ -0.21
UPF3B-202ENST00000345865 DKK1O94907 266 aa13.76□□□□□ -0.21
UPF3B-202ENST00000345865 CD3DP04234 171 aa13.76□□□□□ -0.21
UPF3B-202ENST00000345865 ZNF81P51508 661 aa13.76□□□□□ -0.21
UPF3B-202ENST00000345865 ZNF41P51814 821 aaPredicted RBP13.76□□□□□ -0.21
UPF3B-202ENST00000345865 GLT8D1Q68CQ7 371 aa13.76□□□□□ -0.21
UPF3B-202ENST00000345865 PPP1R3BQ86XI6 285 aa13.76□□□□□ -0.21
UPF3B-202ENST00000345865 CLEC1AQ8NC01 280 aa13.76□□□□□ -0.21
UPF3B-202ENST00000345865 MED30Q96HR3 178 aa13.76□□□□□ -0.21
UPF3B-202ENST00000345865 MRGPRX4Q96LA9 322 aa13.76□□□□□ -0.21
UPF3B-202ENST00000345865 METTL7AQ9H8H3 244 aa13.76□□□□□ -0.21
UPF3B-202ENST00000345865 SLC17A5Q9NRA2 495 aa13.76□□□□□ -0.21
UPF3B-202ENST00000345865 TNRC6BQ9UPQ9 1833 aaKnown RBP13.76□□□□□ -0.21
UPF3B-202ENST00000345865 ARPC4-TTLL3A0A0A6YYG9 625 aa13.76□□□□□ -0.21
UPF3B-202ENST00000345865 MEN1O00255 615 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms