RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 KLHL13Q9P2N7 655 aa9.24□□□□□ -0.93
LIMA1-201ENST00000341247 CKLFQ9UBR5 152 aa9.24□□□□□ -0.93
LIMA1-201ENST00000341247 MRPS18BQ9Y676 258 aaKnown RBP9.24□□□□□ -0.93
LIMA1-201ENST00000341247 COL5A1P20908 1838 aaPredicted RBP9.24□□□□□ -0.93
LIMA1-201ENST00000341247 TMEM272A0A1B0GTI8 110 aa9.24□□□□□ -0.93
LIMA1-201ENST00000341247 ANKRD20A5PA0PJZ0 165 aa9.24□□□□□ -0.93
LIMA1-201ENST00000341247 GGT3PA6NGU5 568 aa9.24□□□□□ -0.93
LIMA1-201ENST00000341247 LIPT2A6NK58 231 aa9.24□□□□□ -0.93
LIMA1-201ENST00000341247 SIX6O95475 246 aa9.24□□□□□ -0.93
LIMA1-201ENST00000341247 APOBEC1P41238 236 aaKnown RBP9.24□□□□□ -0.93
LIMA1-201ENST00000341247 CATSPERDQ86XM0 798 aa9.24□□□□□ -0.93
LIMA1-201ENST00000341247 MEIOBQ8N635 442 aa9.24□□□□□ -0.93
LIMA1-201ENST00000341247 OR4K17Q8NGC6 315 aa9.24□□□□□ -0.93
LIMA1-201ENST00000341247 OR5L2Q8NGL0 311 aa9.24□□□□□ -0.93
LIMA1-201ENST00000341247 RASL10BQ96S79 203 aa9.24□□□□□ -0.93
LIMA1-201ENST00000341247 DIABLOQ9NR28 239 aa9.24□□□□□ -0.93
LIMA1-201ENST00000341247 IGLV3-12A0A075B6K2 115 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 LOC100509620A0A075B734 347 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 IGHV3-15A0A0B4J1V0 119 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 PYCARD-AS1I3L0S3 204 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 ECDO95905 644 aaPredicted RBP9.23□□□□□ -0.93
LIMA1-201ENST00000341247 RAF1P04049 648 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 CD276Q5ZPR3 534 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 OR4C16Q8NGL9 310 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 MFSD8Q8NHS3 518 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 NUBPLQ8TB37 319 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 POC1BQ8TC44 478 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 FGGYQ96C11 551 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 GINS4Q9BRT9 223 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 SOX7Q9BT81 388 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 GON7Q9BXV9 100 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 SDHAF3Q9NRP4 125 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 CA10Q9NS85 328 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 MGAT4CQ9UBM8 478 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 PTRH2Q9Y3E5 179 aaKnown RBP9.23□□□□□ -0.93
LIMA1-201ENST00000341247 WIF1Q9Y5W5 379 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 XRCC3O43542 346 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 DAP3P51398 398 aaKnown RBP9.23□□□□□ -0.93
LIMA1-201ENST00000341247 CLRN1P58418 232 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 TOMM20Q15388 145 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 TEX30Q5JUR7 227 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 B3GNTL1Q67FW5 361 aaPredicted RBP9.23□□□□□ -0.93
LIMA1-201ENST00000341247 FGD2Q7Z6J4 655 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 MISPQ8IVT2 679 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 ACBD4Q8NC06 268 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 OR51S1Q8NGJ8 323 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 SLC39A7Q92504 469 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 KCNK17Q96T54 332 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 C7orf50Q9BRJ6 194 aaKnown RBP9.23□□□□□ -0.93
LIMA1-201ENST00000341247 DPCDQ9BVM2 203 aaPredicted RBP9.23□□□□□ -0.93
LIMA1-201ENST00000341247 TNRC6BQ9UPQ9 1833 aaKnown RBP9.23□□□□□ -0.93
LIMA1-201ENST00000341247 M0QYG6 137 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 CD3DP04234 171 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 HTR2CP28335 458 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 MNDAP41218 407 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 PTGDSP41222 190 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 BLVRAP53004 296 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 PLPPR5Q32ZL2 321 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 MOGAT2Q3SYC2 334 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 NHLRC1Q6VVB1 395 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 EDAQ92838 391 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 CMBLQ96DG6 245 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 GNRHR2Q96P88 292 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 RBP7Q96R05 134 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 IRF2BPLQ9H1B7 796 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 DLL4Q9NR61 685 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 HHLA2Q9UM44 414 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 ETV7Q9Y603 341 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 R4GMQ9 66 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 SMG1Q96Q15 3661 aaKnown RBP9.23□□□□□ -0.93
LIMA1-201ENST00000341247 DSPP15924 2871 aaKnown RBP9.23□□□□□ -0.93
LIMA1-201ENST00000341247 EXPH5Q8NEV8 1989 aa9.23□□□□□ -0.93
LIMA1-201ENST00000341247 LIPCP11150 499 aa9.22□□□□□ -0.93
LIMA1-201ENST00000341247 RSPO4Q2I0M5 234 aaPredicted RBP9.22□□□□□ -0.93
LIMA1-201ENST00000341247 GLT8D1Q68CQ7 371 aa9.22□□□□□ -0.93
LIMA1-201ENST00000341247 PMS2CLQ68D20 193 aa9.22□□□□□ -0.93
LIMA1-201ENST00000341247 NLRC3Q7RTR2 1065 aa9.22□□□□□ -0.93
LIMA1-201ENST00000341247 UEVLDQ8IX04 471 aa9.22□□□□□ -0.93
LIMA1-201ENST00000341247 ST7LQ8TDW4 575 aa9.22□□□□□ -0.93
LIMA1-201ENST00000341247 SLAMF6Q96DU3 332 aa9.22□□□□□ -0.93
LIMA1-201ENST00000341247 B3GAT1Q9P2W7 334 aa9.22□□□□□ -0.93
LIMA1-201ENST00000341247 PILRBQ9UKJ0 227 aa9.22□□□□□ -0.93
LIMA1-201ENST00000341247 FARSAQ9Y285 508 aaKnown RBP9.22□□□□□ -0.93
LIMA1-201ENST00000341247 LOC100289279A0A1B0GTE1 492 aa9.22□□□□□ -0.93
LIMA1-201ENST00000341247 A6NIZ1 184 aa9.22□□□□□ -0.93
LIMA1-201ENST00000341247 SLC17A2O00624 439 aa9.22□□□□□ -0.93
LIMA1-201ENST00000341247 ANOS1P23352 680 aa9.22□□□□□ -0.93
LIMA1-201ENST00000341247 RAP1BP61224 184 aa9.22□□□□□ -0.93
LIMA1-201ENST00000341247 RAP1AP62834 184 aa9.22□□□□□ -0.93
LIMA1-201ENST00000341247 ROM1Q03395 351 aa9.22□□□□□ -0.93
LIMA1-201ENST00000341247 ZNF385CQ66K41 422 aaPredicted RBP9.22□□□□□ -0.93
LIMA1-201ENST00000341247 ANKRD16Q6P6B7 361 aa9.22□□□□□ -0.93
LIMA1-201ENST00000341247 DNM1P34Q6PK57 102 aa9.22□□□□□ -0.93
LIMA1-201ENST00000341247 RNF144BQ7Z419 303 aa9.22□□□□□ -0.93
LIMA1-201ENST00000341247 OR8H3Q8N146 312 aa9.22□□□□□ -0.93
LIMA1-201ENST00000341247 CMTM3Q96MX0 182 aa9.22□□□□□ -0.93
LIMA1-201ENST00000341247 G6PC2Q9NQR9 355 aa9.22□□□□□ -0.93
LIMA1-201ENST00000341247 GPN3Q9UHW5 284 aaPredicted RBP9.22□□□□□ -0.93
LIMA1-201ENST00000341247 PPIEQ9UNP9 301 aaKnown RBP9.22□□□□□ -0.93
LIMA1-201ENST00000341247 TECTAO75443 2155 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms