RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 CATSPERDQ86XM0 798 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 ABHD3Q8WU67 409 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 PPP1R14AQ96A00 147 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 ULBP2Q9BZM5 246 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 ASH2LQ9UBL3 628 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 FOXD3Q9UJU5 478 aaPredicted RBP11.86□□□□□ -0.51
HMGB1-202ENST00000339872 R4GMQ9 66 aa11.86□□□□□ -0.51
HMGB1-202ENST00000339872 GPR171O14626 319 aa11.85□□□□□ -0.51
HMGB1-202ENST00000339872 CYTIPO60759 359 aa11.85□□□□□ -0.51
HMGB1-202ENST00000339872 SRSF10O75494 262 aaKnown RBP11.85□□□□□ -0.51
HMGB1-202ENST00000339872 ZNF12P17014 697 aa11.85□□□□□ -0.51
HMGB1-202ENST00000339872 GUCA1AP43080 201 aaPredicted RBP11.85□□□□□ -0.51
HMGB1-202ENST00000339872 SGCAQ16586 387 aa11.85□□□□□ -0.51
HMGB1-202ENST00000339872 DEGS2Q6QHC5 323 aa11.85□□□□□ -0.51
HMGB1-202ENST00000339872 FAM131AQ6UXB0 335 aa11.85□□□□□ -0.51
HMGB1-202ENST00000339872 FAM109AQ8N4B1 249 aa11.85□□□□□ -0.51
HMGB1-202ENST00000339872 MEIOBQ8N635 442 aa11.85□□□□□ -0.51
HMGB1-202ENST00000339872 IL17RDQ8NFM7 739 aa11.85□□□□□ -0.51
HMGB1-202ENST00000339872 OR10S1Q8NGN2 331 aa11.85□□□□□ -0.51
HMGB1-202ENST00000339872 GPR148Q8TDV2 347 aa11.85□□□□□ -0.51
HMGB1-202ENST00000339872 TSEN15Q8WW01 171 aaKnown RBP11.85□□□□□ -0.51
HMGB1-202ENST00000339872 ACOT12Q8WYK0 555 aa11.85□□□□□ -0.51
HMGB1-202ENST00000339872 RBM24Q9BX46 236 aaKnown RBP11.85□□□□□ -0.51
HMGB1-202ENST00000339872 RCE1Q9Y256 329 aa11.85□□□□□ -0.51
HMGB1-202ENST00000339872 AK6Q9Y3D8 172 aaKnown RBP11.85□□□□□ -0.51
HMGB1-202ENST00000339872 LIPGQ9Y5X9 500 aa11.85□□□□□ -0.51
HMGB1-202ENST00000339872 SLC2A2P11168 524 aaPredicted RBP11.85□□□□□ -0.51
HMGB1-202ENST00000339872 AZGP1P25311 298 aaKnown RBP11.85□□□□□ -0.51
HMGB1-202ENST00000339872 THBS2P35442 1172 aa11.85□□□□□ -0.51
HMGB1-202ENST00000339872 MADCAM1Q13477 382 aa11.85□□□□□ -0.51
HMGB1-202ENST00000339872 SLC10A1Q14973 349 aa11.85□□□□□ -0.51
HMGB1-202ENST00000339872 KCNMB1Q16558 191 aa11.85□□□□□ -0.51
HMGB1-202ENST00000339872 ZNF181Q2M3W8 571 aa11.85□□□□□ -0.51
HMGB1-202ENST00000339872 AAED1Q7RTV5 226 aa11.85□□□□□ -0.51
HMGB1-202ENST00000339872 C20orf196Q8IYI0 205 aa11.85□□□□□ -0.51
HMGB1-202ENST00000339872 ABTB1Q969K4 478 aaPredicted RBP11.85□□□□□ -0.51
HMGB1-202ENST00000339872 TMEM106AQ96A25 262 aa11.85□□□□□ -0.51
HMGB1-202ENST00000339872 INTS12Q96CB8 462 aaKnown RBP11.85□□□□□ -0.51
HMGB1-202ENST00000339872 KCTD12Q96CX2 325 aaKnown RBP11.85□□□□□ -0.51
HMGB1-202ENST00000339872 CUL9Q8IWT3 2517 aa11.84□□□□□ -0.51
HMGB1-202ENST00000339872 hCG_2014768A0A024R1R8 64 aa11.84□□□□□ -0.51
HMGB1-202ENST00000339872 TMEM269A0A1B0GVZ9 245 aa11.84□□□□□ -0.51
HMGB1-202ENST00000339872 DCDC2BA2VCK2 349 aa11.84□□□□□ -0.51
HMGB1-202ENST00000339872 NOTOA8MTQ0 251 aa11.84□□□□□ -0.51
HMGB1-202ENST00000339872 DHHO43323 396 aa11.84□□□□□ -0.51
HMGB1-202ENST00000339872 SLC43A1O75387 559 aa11.84□□□□□ -0.51
HMGB1-202ENST00000339872 MSR1P21757 451 aa11.84□□□□□ -0.51
HMGB1-202ENST00000339872 NTF4P34130 210 aa11.84□□□□□ -0.51
HMGB1-202ENST00000339872 ZNF133P52736 654 aaPredicted RBP11.84□□□□□ -0.51
HMGB1-202ENST00000339872 ZNF79Q15937 498 aa11.84□□□□□ -0.51
HMGB1-202ENST00000339872 CEP78Q5JTW2 689 aa11.84□□□□□ -0.51
HMGB1-202ENST00000339872 SDHCQ99643 169 aaPredicted RBP11.84□□□□□ -0.51
HMGB1-202ENST00000339872 ZNF416Q9BWM5 594 aa11.84□□□□□ -0.51
HMGB1-202ENST00000339872 DEFB127Q9H1M4 99 aa11.84□□□□□ -0.51
HMGB1-202ENST00000339872 NELFAQ9H3P2 528 aa11.84□□□□□ -0.51
HMGB1-202ENST00000339872 LDAHQ9H6V9 325 aa11.84□□□□□ -0.51
HMGB1-202ENST00000339872 EXO5Q9H790 373 aa11.84□□□□□ -0.51
HMGB1-202ENST00000339872 TCF7L1Q9HCS4 588 aa11.84□□□□□ -0.51
HMGB1-202ENST00000339872 BRD7Q9NPI1 651 aa11.84□□□□□ -0.51
HMGB1-202ENST00000339872 KLK13Q9UKR3 277 aa11.84□□□□□ -0.51
HMGB1-202ENST00000339872 ZNF407Q9C0G0 2248 aa11.84□□□□□ -0.51
HMGB1-202ENST00000339872 FABP12A6NFH5 140 aa11.83□□□□□ -0.51
HMGB1-202ENST00000339872 ZNF878C9JN71 531 aa11.83□□□□□ -0.51
HMGB1-202ENST00000339872 DOK2O60496 412 aa11.83□□□□□ -0.51
HMGB1-202ENST00000339872 ZNF84P51523 738 aa11.83□□□□□ -0.51
HMGB1-202ENST00000339872 PMP22Q01453 160 aa11.83□□□□□ -0.51
HMGB1-202ENST00000339872 NHLH1Q02575 133 aa11.83□□□□□ -0.51
HMGB1-202ENST00000339872 C3AR1Q16581 482 aa11.83□□□□□ -0.51
HMGB1-202ENST00000339872 RNFT1Q5M7Z0 435 aa11.83□□□□□ -0.51
HMGB1-202ENST00000339872 STEAP3Q658P3 488 aa11.83□□□□□ -0.51
HMGB1-202ENST00000339872 CNIH2Q6PI25 160 aa11.83□□□□□ -0.51
HMGB1-202ENST00000339872 KLHL24Q6TFL4 600 aa11.83□□□□□ -0.51
HMGB1-202ENST00000339872 PLXDC2Q6UX71 529 aa11.83□□□□□ -0.51
HMGB1-202ENST00000339872 LYSMD2Q8IV50 215 aa11.83□□□□□ -0.51
HMGB1-202ENST00000339872 ZNF433Q8N7K0 673 aaPredicted RBP11.83□□□□□ -0.51
HMGB1-202ENST00000339872 SLITRK2Q9H156 845 aa11.83□□□□□ -0.51
HMGB1-202ENST00000339872 ACKR4Q9NPB9 350 aa11.83□□□□□ -0.51
HMGB1-202ENST00000339872 G6PC2Q9NQR9 355 aa11.83□□□□□ -0.51
HMGB1-202ENST00000339872 ADAM30Q9UKF2 790 aa11.83□□□□□ -0.51
HMGB1-202ENST00000339872 OR52A1Q9UKL2 312 aa11.83□□□□□ -0.51
HMGB1-202ENST00000339872 ANKRD61A6NGH8 418 aa11.83□□□□□ -0.52
HMGB1-202ENST00000339872 PDCD5O14737 125 aa11.83□□□□□ -0.52
HMGB1-202ENST00000339872 RER1O15258 196 aa11.83□□□□□ -0.52
HMGB1-202ENST00000339872 SYNGR4O95473 234 aa11.83□□□□□ -0.52
HMGB1-202ENST00000339872 EPXP11678 715 aa11.83□□□□□ -0.52
HMGB1-202ENST00000339872 ATF1P18846 271 aa11.83□□□□□ -0.52
HMGB1-202ENST00000339872 HSD11B1P28845 292 aa11.83□□□□□ -0.52
HMGB1-202ENST00000339872 IGFL2Q6UWQ7 119 aa11.83□□□□□ -0.52
HMGB1-202ENST00000339872 CENPSQ8N2Z9 138 aa11.83□□□□□ -0.52
HMGB1-202ENST00000339872 TRMT10AQ8TBZ6 339 aaKnown RBP11.83□□□□□ -0.52
HMGB1-202ENST00000339872 CHPT1Q8WUD6 406 aa11.83□□□□□ -0.52
HMGB1-202ENST00000339872 ZNF837Q96EG3 531 aaPredicted RBP11.83□□□□□ -0.52
HMGB1-202ENST00000339872 ALKBH3Q96Q83 286 aaPredicted RBP11.83□□□□□ -0.52
HMGB1-202ENST00000339872 CCDC32Q9BV29 185 aa11.83□□□□□ -0.52
HMGB1-202ENST00000339872 C14orf119Q9NWQ9 140 aa11.83□□□□□ -0.52
HMGB1-202ENST00000339872 MALT1Q9UDY8 824 aa11.83□□□□□ -0.52
HMGB1-202ENST00000339872 KCNMB2Q9Y691 235 aa11.83□□□□□ -0.52
HMGB1-202ENST00000339872 FAM25AB3EWG3 89 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 FAM25CB3EWG5 89 aa11.82□□□□□ -0.52
HMGB1-202ENST00000339872 FAM25GB3EWG6 89 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms