RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 ASH2LQ9UBL3 628 aa13.13□□□□□ -0.31
CCDC88C-202ENST00000334448 IKZF2Q9UKS7 526 aa13.13□□□□□ -0.31
CCDC88C-202ENST00000334448 CLEC4AQ9UMR7 237 aa13.13□□□□□ -0.31
CCDC88C-202ENST00000334448 BSNQ9UPA5 3926 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 A0A1W2PPW3 197 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 ZNF878C9JN71 531 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 MAGEB4O15481 346 aaPredicted RBP13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 WNT11O96014 354 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 GDI2P50395 445 aaKnown RBP13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 MMP16P51512 607 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 NCS1P62166 190 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 TUBA1BP68363 451 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 KLRB1Q12918 225 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 SPCS2Q15005 226 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 ARL9Q6T311 187 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 LRRN1Q6UXK5 716 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 TFAP2EQ6VUC0 442 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 RPTNQ6XPR3 784 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 CFAP77Q6ZQR2 320 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 TUBA1AQ71U36 451 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 KRT77Q7Z794 578 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 LINC00346Q8IVM7 164 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 YIPF7Q8N8F6 280 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 ZFP41Q8N8Y5 198 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 C9orf106Q8NAJ2 232 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 GJC3Q8NFK1 279 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 OR5M9Q8NGP3 310 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 OR6K3Q8NGY3 331 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 OR2AJ1Q8NGZ0 328 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 OR2G2Q8NGZ5 317 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 PHYHIPQ92561 330 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 SLAMF6Q96DU3 332 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 TRMT61AQ96FX7 289 aaKnown RBP13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 BOD1Q96IK1 185 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 C4orf45Q96LM5 186 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 CHCHD6Q9BRQ6 235 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 CENPOQ9BU64 300 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 LUZP4Q9P127 313 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 ATPIF1Q9UII2 106 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 SSR3Q9UNL2 185 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 ZNF835Q9Y2P0 537 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 POLR1DQ9Y2S0 133 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 EMC9Q9Y3B6 208 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 GRIP1Q9Y3R0 1128 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 LRP12Q9Y561 859 aa13.12□□□□□ -0.31
CCDC88C-202ENST00000334448 OR4C45A6NMZ5 311 aa13.11□□□□□ -0.31
CCDC88C-202ENST00000334448 RGS9O75916 674 aaPredicted RBP13.11□□□□□ -0.31
CCDC88C-202ENST00000334448 PCSK6P29122 969 aa13.11□□□□□ -0.31
CCDC88C-202ENST00000334448 OTX1P32242 354 aaPredicted RBP13.11□□□□□ -0.31
CCDC88C-202ENST00000334448 TIMP3P35625 211 aa13.11□□□□□ -0.31
CCDC88C-202ENST00000334448 NANOS3P60323 173 aaKnown RBP13.11□□□□□ -0.31
CCDC88C-202ENST00000334448 FABP5Q01469 135 aa13.11□□□□□ -0.31
CCDC88C-202ENST00000334448 ALKBH1Q13686 389 aaKnown RBP13.11□□□□□ -0.31
CCDC88C-202ENST00000334448 SGCAQ16586 387 aa13.11□□□□□ -0.31
CCDC88C-202ENST00000334448 C1orf185Q5T7R7 199 aa13.11□□□□□ -0.31
CCDC88C-202ENST00000334448 OTPQ5XKR4 325 aa13.11□□□□□ -0.31
CCDC88C-202ENST00000334448 FBXW9Q5XUX1 488 aa13.11□□□□□ -0.31
CCDC88C-202ENST00000334448 RTL6Q6ICC9 239 aa13.11□□□□□ -0.31
CCDC88C-202ENST00000334448 ZNF544Q6NX49 715 aa13.11□□□□□ -0.31
CCDC88C-202ENST00000334448 SEM1Q6ZVN7 128 aa13.11□□□□□ -0.31
CCDC88C-202ENST00000334448 USP43Q70EL4 1123 aa13.11□□□□□ -0.31
CCDC88C-202ENST00000334448 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.11□□□□□ -0.31
CCDC88C-202ENST00000334448 ZNF100Q8IYN0 542 aa13.11□□□□□ -0.31
CCDC88C-202ENST00000334448 SLC22A24Q8N4F4 322 aa13.11□□□□□ -0.31
CCDC88C-202ENST00000334448 CISD2Q8N5K1 135 aaKnown RBP13.11□□□□□ -0.31
CCDC88C-202ENST00000334448 TEX19Q8NA77 164 aa13.11□□□□□ -0.31
CCDC88C-202ENST00000334448 DYNC2LI1Q8TCX1 351 aa13.11□□□□□ -0.31
CCDC88C-202ENST00000334448 GHSRQ92847 366 aa13.11□□□□□ -0.31
CCDC88C-202ENST00000334448 SNRNP40Q96DI7 357 aaKnown RBP13.11□□□□□ -0.31
CCDC88C-202ENST00000334448 MOB1AQ9H8S9 216 aa13.11□□□□□ -0.31
CCDC88C-202ENST00000334448 TXNL4BQ9NX01 149 aaKnown RBP13.11□□□□□ -0.31
CCDC88C-202ENST00000334448 FAM215AQ9Y5M1 114 aa13.11□□□□□ -0.31
CCDC88C-202ENST00000334448 R4GMQ9 66 aa13.11□□□□□ -0.31
CCDC88C-202ENST00000334448 TRBV2A0A0J9YWF9 115 aa13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 LOC100506127A0A0U1RQW1 187 aa13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 TMEM212A6NML5 194 aa13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 GATBO75879 557 aaKnown RBP13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 KRT33AO76009 404 aa13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 ZFPL1O95159 310 aa13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 SERPINA3P01011 423 aa13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 NR4A1P22736 598 aa13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 MPGP29372 298 aa13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 KIR2DL2P43627 348 aaPredicted RBP13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 PSMA6P60900 246 aaKnown RBP13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 PCBD1P61457 104 aa13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 VBP1P61758 197 aa13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 RPS11P62280 158 aaKnown RBP eCLIP13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 GRB2P62993 217 aaKnown RBP13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 SCRN3Q0VDG4 424 aa13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 ZNF829Q3KNS6 432 aaPredicted RBP13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 SOWAHCQ53LP3 525 aaPredicted RBP13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 YIF1BQ5BJH7 314 aa13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 CORO6Q6QEF8 472 aa13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 PAMR1Q6UXH9 720 aa13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 TMEM91Q6ZNR0 172 aa13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 DPPA2Q7Z7J5 298 aa13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 CATSPERDQ86XM0 798 aa13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 IL17RDQ8NFM7 739 aa13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 HSD17B8Q92506 261 aa13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 THRSPQ92748 146 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms