RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 SLC6A17Q9H1V8 727 aa17.58■□□□□ 0.4
USP48-201ENST00000308271 TTLL8A6PVC2 850 aa17.58■□□□□ 0.4
USP48-201ENST00000308271 EIF4E2O60573 245 aaKnown RBP17.58■□□□□ 0.4
USP48-201ENST00000308271 APEHP13798 732 aaKnown RBP17.58■□□□□ 0.4
USP48-201ENST00000308271 ALOX5APP20292 161 aa17.58■□□□□ 0.4
USP48-201ENST00000308271 OMGP23515 440 aa17.58■□□□□ 0.4
USP48-201ENST00000308271 EPHA4P54764 986 aa17.58■□□□□ 0.4
USP48-201ENST00000308271 RAB1AP62820 205 aa17.58■□□□□ 0.4
USP48-201ENST00000308271 ZP2Q05996 745 aa17.58■□□□□ 0.4
USP48-201ENST00000308271 ALKBH2Q6NS38 261 aa17.58■□□□□ 0.4
USP48-201ENST00000308271 TMEM91Q6ZNR0 172 aa17.58■□□□□ 0.4
USP48-201ENST00000308271 NUDCD2Q8WVJ2 157 aa17.58■□□□□ 0.4
USP48-201ENST00000308271 LRIT1Q9P2V4 623 aa17.58■□□□□ 0.4
USP48-201ENST00000308271 SLC22A13Q9Y226 551 aa17.58■□□□□ 0.4
USP48-201ENST00000308271 CDC42EP2O14613 210 aa17.57■□□□□ 0.4
USP48-201ENST00000308271 RPS27P42677 84 aaKnown RBP17.57■□□□□ 0.4
USP48-201ENST00000308271 MTCP1P56278 107 aa17.57■□□□□ 0.4
USP48-201ENST00000308271 HSD17B7P56937 341 aa17.57■□□□□ 0.4
USP48-201ENST00000308271 OR4D6Q8NGJ1 314 aa17.57■□□□□ 0.4
USP48-201ENST00000308271 ZNF296Q8WUU4 475 aaPredicted RBP17.57■□□□□ 0.4
USP48-201ENST00000308271 MARVELD3Q96A59 401 aa17.57■□□□□ 0.4
USP48-201ENST00000308271 GAS2L1Q99501 681 aaPredicted RBP17.57■□□□□ 0.4
USP48-201ENST00000308271 HAO2Q9NYQ3 351 aa17.57■□□□□ 0.4
USP48-201ENST00000308271 FBXO7Q9Y3I1 522 aa17.57■□□□□ 0.4
USP48-201ENST00000308271 HCFC2Q9Y5Z7 792 aa17.57■□□□□ 0.4
USP48-201ENST00000308271 MCM3APO60318 1980 aa17.57■□□□□ 0.4
USP48-201ENST00000308271 SCN4AP35499 1836 aa17.57■□□□□ 0.4
USP48-201ENST00000308271 A0A0B4J2E0 115 aa17.57■□□□□ 0.4
USP48-201ENST00000308271 A0A1B0GX12 115 aa17.57■□□□□ 0.4
USP48-201ENST00000308271 UMAD1C9J7I0 102 aa17.57■□□□□ 0.4
USP48-201ENST00000308271 ARPC3O15145 178 aa17.57■□□□□ 0.4
USP48-201ENST00000308271 VEGFBP49765 207 aa17.57■□□□□ 0.4
USP48-201ENST00000308271 GHITMQ9H3K2 345 aa17.57■□□□□ 0.4
USP48-201ENST00000308271 SEMA6CQ9H3T2 930 aa17.57■□□□□ 0.4
USP48-201ENST00000308271 RHOFQ9HBH0 211 aa17.57■□□□□ 0.4
USP48-201ENST00000308271 OR2C1O95371 312 aa17.57■□□□□ 0.4
USP48-201ENST00000308271 OR13C7P0DN81 318 aa17.57■□□□□ 0.4
USP48-201ENST00000308271 ITGB8P26012 769 aa17.57■□□□□ 0.4
USP48-201ENST00000308271 OR13C8Q8NGS7 320 aa17.57■□□□□ 0.4
USP48-201ENST00000308271 FN3KRPQ9HA64 309 aa17.57■□□□□ 0.4
USP48-201ENST00000308271 STRCP1A6NGW2 1772 aa17.57■□□□□ 0.4
USP48-201ENST00000308271 SDHBP21912 280 aa17.57■□□□□ 0.4
USP48-201ENST00000308271 MECP2P51608 486 aaKnown RBP17.57■□□□□ 0.4
USP48-201ENST00000308271 ACKR1Q16570 336 aa17.57■□□□□ 0.4
USP48-201ENST00000308271 ANKRD16Q6P6B7 361 aa17.57■□□□□ 0.4
USP48-201ENST00000308271 STPG2Q8N412 459 aa17.57■□□□□ 0.4
USP48-201ENST00000308271 OR14L1PQ8NHC6 308 aa17.57■□□□□ 0.4
USP48-201ENST00000308271 LDAHQ9H6V9 325 aa17.57■□□□□ 0.4
USP48-201ENST00000308271 TBC1D29Q9UFV1 150 aa17.57■□□□□ 0.4
USP48-201ENST00000308271 GJE1A6NN92 205 aa17.56■□□□□ 0.4
USP48-201ENST00000308271 FCGR2CP31995 323 aa17.56■□□□□ 0.4
USP48-201ENST00000308271 HRH1P35367 487 aa17.56■□□□□ 0.4
USP48-201ENST00000308271 RAB13P51153 203 aa17.56■□□□□ 0.4
USP48-201ENST00000308271 BIDP55957 195 aa17.56■□□□□ 0.4
USP48-201ENST00000308271 ZNF74Q16587 644 aa17.56■□□□□ 0.4
USP48-201ENST00000308271 OR6K3Q8NGY3 331 aa17.56■□□□□ 0.4
USP48-201ENST00000308271 RAB39BQ96DA2 213 aa17.56■□□□□ 0.4
USP48-201ENST00000308271 C2orf50Q96LR7 162 aa17.56■□□□□ 0.4
USP48-201ENST00000308271 OCSTAMPQ9BR26 566 aa17.56■□□□□ 0.4
USP48-201ENST00000308271 CUTCQ9NTM9 273 aa17.56■□□□□ 0.4
USP48-201ENST00000308271 PIAS3Q9Y6X2 628 aa17.56■□□□□ 0.4
USP48-201ENST00000308271 GREB1LQ9C091 1923 aaPredicted RBP17.56■□□□□ 0.4
USP48-201ENST00000308271 PRRT4C9JH25 899 aa17.56■□□□□ 0.4
USP48-201ENST00000308271 ST8SIA3O43173 380 aa17.56■□□□□ 0.4
USP48-201ENST00000308271 LANCL1O43813 399 aa17.56■□□□□ 0.4
USP48-201ENST00000308271 C1QCP02747 245 aa17.56■□□□□ 0.4
USP48-201ENST00000308271 RPL12P30050 165 aaKnown RBP17.56■□□□□ 0.4
USP48-201ENST00000308271 CSF2RBP32927 897 aa17.56■□□□□ 0.4
USP48-201ENST00000308271 RPS18P62269 152 aaKnown RBP17.56■□□□□ 0.4
USP48-201ENST00000308271 EEF1A2Q05639 463 aaKnown RBP17.56■□□□□ 0.4
USP48-201ENST00000308271 RUNX2Q13950 521 aa17.56■□□□□ 0.4
USP48-201ENST00000308271 CLINT1Q14677 625 aa17.56■□□□□ 0.4
USP48-201ENST00000308271 SMAD2Q15796 467 aaKnown RBP17.56■□□□□ 0.4
USP48-201ENST00000308271 ASTLQ6HA08 431 aaPredicted RBP17.56■□□□□ 0.4
USP48-201ENST00000308271 MARCH1Q8TCQ1 289 aa17.56■□□□□ 0.4
USP48-201ENST00000308271 CPNE4Q96A23 557 aaPredicted RBP17.56■□□□□ 0.4
USP48-201ENST00000308271 SIGLEC11Q96RL6 698 aa17.56■□□□□ 0.4
USP48-201ENST00000308271 KCNG2Q9UJ96 466 aa17.56■□□□□ 0.4
USP48-201ENST00000308271 MMACHCQ9Y4U1 282 aa17.56■□□□□ 0.4
USP48-201ENST00000308271 ZNF770Q6IQ21 691 aaPredicted RBP17.56■□□□□ 0.4
USP48-201ENST00000308271 GRINAQ7Z429 371 aa17.56■□□□□ 0.4
USP48-201ENST00000308271 BCORP1Q8N888 145 aa17.56■□□□□ 0.4
USP48-201ENST00000308271 AMER3Q8N944 861 aa17.56■□□□□ 0.4
USP48-201ENST00000308271 OR5M9Q8NGP3 310 aa17.56■□□□□ 0.4
USP48-201ENST00000308271 FAM3CQ92520 227 aa17.56■□□□□ 0.4
USP48-201ENST00000308271 EMG1Q92979 244 aaKnown RBP17.56■□□□□ 0.4
USP48-201ENST00000308271 PAPOLGQ9BWT3 736 aaKnown RBP17.56■□□□□ 0.4
USP48-201ENST00000308271 TINAGL1Q9GZM7 467 aaPredicted RBP17.56■□□□□ 0.4
USP48-201ENST00000308271 PLEKHA2Q9HB19 425 aa17.56■□□□□ 0.4
USP48-201ENST00000308271 HOXC8P31273 242 aa17.55■□□□□ 0.4
USP48-201ENST00000308271 THSD4Q6ZMP0 1018 aa17.55■□□□□ 0.4
USP48-201ENST00000308271 ZSCAN4Q8NAM6 433 aaPredicted RBP17.55■□□□□ 0.4
USP48-201ENST00000308271 ACAD8Q9UKU7 415 aa17.55■□□□□ 0.4
USP48-201ENST00000308271 STRAPQ9Y3F4 350 aaKnown RBP17.55■□□□□ 0.4
USP48-201ENST00000308271 A0A087WZY1 265 aa17.55■□□□□ 0.4
USP48-201ENST00000308271 DCTN6O00399 190 aa17.55■□□□□ 0.4
USP48-201ENST00000308271 PTAFRP25105 342 aa17.55■□□□□ 0.4
USP48-201ENST00000308271 EMDP50402 254 aa17.55■□□□□ 0.4
USP48-201ENST00000308271 GABREP78334 506 aa17.55■□□□□ 0.4
USP48-201ENST00000308271 OGFOD3Q6PK18 319 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms