RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 P2RY10O00398 339 aa11.4□□□□□ -0.58
LIG1-201ENST00000263274 LDOC1O95751 146 aaPredicted RBP11.4□□□□□ -0.58
LIG1-201ENST00000263274 ACTBP60709 375 aa11.4□□□□□ -0.58
LIG1-201ENST00000263274 ACTG1P63261 375 aa11.4□□□□□ -0.58
LIG1-201ENST00000263274 FMODQ06828 376 aa11.4□□□□□ -0.58
LIG1-201ENST00000263274 SKP2Q13309 424 aa11.4□□□□□ -0.58
LIG1-201ENST00000263274 OR52W1Q6IF63 320 aa11.4□□□□□ -0.58
LIG1-201ENST00000263274 SEZ6L2Q6UXD5 910 aa11.4□□□□□ -0.58
LIG1-201ENST00000263274 MSRAQ9UJ68 235 aa11.4□□□□□ -0.58
LIG1-201ENST00000263274 CD207Q9UJ71 328 aa11.4□□□□□ -0.58
LIG1-201ENST00000263274 MRTO4Q9UKD2 239 aaKnown RBP11.4□□□□□ -0.58
LIG1-201ENST00000263274 C2orf16Q68DN1 1984 aa11.4□□□□□ -0.59
LIG1-201ENST00000263274 SLC22A23A1A5C7 686 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 LMX1BO60663 402 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 AHSA1O95433 338 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 IFNA6P05013 189 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 RGS7BPQ6MZT1 257 aaPredicted RBP11.39□□□□□ -0.59
LIG1-201ENST00000263274 ARMC10Q8N2F6 343 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 ZNF615Q8N8J6 731 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 LCORQ96JN0 433 aaPredicted RBP11.39□□□□□ -0.59
LIG1-201ENST00000263274 ZNF587Q96SQ5 575 aaPredicted RBP11.39□□□□□ -0.59
LIG1-201ENST00000263274 DPYSL5Q9BPU6 564 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 ABHD6Q9BV23 337 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 EMC6Q9BV81 110 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 SLC19A3Q9BZV2 496 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 ZNF768Q9H5H4 540 aaKnown RBP11.39□□□□□ -0.59
LIG1-201ENST00000263274 SEC61A2Q9H9S3 476 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 TRBV5-5A0A0J9YX44 114 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 TMEM269A0A1B0GVZ9 245 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 OR2A4O95047 310 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 ABHD16AO95870 558 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 WNT11O96014 354 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 ASAH2BP0C7U1 165 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 TAS2R19P59542 299 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 FZD2Q14332 565 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 MOGAT2Q3SYC2 334 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 FAM209BQ5JX69 171 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 ZNF684Q5T5D7 378 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 EEF1A1P5Q5VTE0 462 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 TMEM225Q6GV28 225 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 Q6ZS52 159 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 FAM219AQ8IW50 185 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 ZNF679Q8IYX0 411 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 GVQW1Q8N7I0 195 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 TMEM185AQ8NFB2 350 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 OR6N1Q8NGY5 312 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 ZNF75AQ96N20 296 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 OR2A7Q96R45 310 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 OR8B4Q96RC9 309 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 EDARQ9UNE0 448 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 PLCL2Q9UPR0 1127 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 TICRRQ7Z2Z1 1910 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 H7C2Y5 167 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 SLC17A2O00624 439 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 NSA2O95478 260 aaKnown RBP11.39□□□□□ -0.59
LIG1-201ENST00000263274 HLA-DOBP13765 273 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 AVPR2P30518 371 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 FUT7Q11130 342 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 RNASE10Q5GAN6 216 aaKnown RBP11.39□□□□□ -0.59
LIG1-201ENST00000263274 SLC36A1Q7Z2H8 476 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 ZNF101Q8IZC7 436 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 NUDCD2Q8WVJ2 157 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 RNF166Q96A37 237 aaPredicted RBP11.39□□□□□ -0.59
LIG1-201ENST00000263274 ZBTB8AQ96BR9 441 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 MKL2Q9ULH7 1088 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 MRPS18BQ9Y676 258 aaKnown RBP11.39□□□□□ -0.59
LIG1-201ENST00000263274 AUP1Q9Y679 476 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 RNF215Q9Y6U7 377 aa11.39□□□□□ -0.59
LIG1-201ENST00000263274 ABCA7Q8IZY2 2146 aa11.38□□□□□ -0.59
LIG1-201ENST00000263274 SPTY2D1-AS1A0A0U1RR47 76 aa11.38□□□□□ -0.59
LIG1-201ENST00000263274 PRSS37A4D1T9 235 aa11.38□□□□□ -0.59
LIG1-201ENST00000263274 OR2AT4A6NND4 320 aa11.38□□□□□ -0.59
LIG1-201ENST00000263274 MYF5P13349 255 aa11.38□□□□□ -0.59
LIG1-201ENST00000263274 BLKP51451 505 aa11.38□□□□□ -0.59
LIG1-201ENST00000263274 PRKXP51817 358 aa11.38□□□□□ -0.59
LIG1-201ENST00000263274 AKIRIN2Q53H80 203 aa11.38□□□□□ -0.59
LIG1-201ENST00000263274 ATRAIDQ6UW56 229 aa11.38□□□□□ -0.59
LIG1-201ENST00000263274 TMPRSS9Q7Z410 1059 aa11.38□□□□□ -0.59
LIG1-201ENST00000263274 DCXRQ7Z4W1 244 aa11.38□□□□□ -0.59
LIG1-201ENST00000263274 BIVMQ86UB2 503 aa11.38□□□□□ -0.59
LIG1-201ENST00000263274 SLC41A2Q96JW4 573 aa11.38□□□□□ -0.59
LIG1-201ENST00000263274 RBM14Q96PK6 669 aaKnown RBP11.38□□□□□ -0.59
LIG1-201ENST00000263274 DMRTA2Q96SC8 542 aa11.38□□□□□ -0.59
LIG1-201ENST00000263274 NPAS1Q99742 590 aa11.38□□□□□ -0.59
LIG1-201ENST00000263274 TMED7-TICAM2A0A0A6YYA0 188 aa11.38□□□□□ -0.59
LIG1-201ENST00000263274 OR5H14A6NHG9 310 aa11.38□□□□□ -0.59
LIG1-201ENST00000263274 PGCP20142 388 aa11.38□□□□□ -0.59
LIG1-201ENST00000263274 CAPZA1P52907 286 aa11.38□□□□□ -0.59
LIG1-201ENST00000263274 BAMBIQ13145 260 aa11.38□□□□□ -0.59
LIG1-201ENST00000263274 SERTAD2Q14140 314 aa11.38□□□□□ -0.59
LIG1-201ENST00000263274 CSRP2Q16527 193 aa11.38□□□□□ -0.59
LIG1-201ENST00000263274 PRTGQ2VWP7 1150 aa11.38□□□□□ -0.59
LIG1-201ENST00000263274 ZNF660Q6AZW8 331 aaPredicted RBP11.38□□□□□ -0.59
LIG1-201ENST00000263274 FOXRED2Q8IWF2 684 aa11.38□□□□□ -0.59
LIG1-201ENST00000263274 PTPMT1Q8WUK0 201 aaPredicted RBP11.38□□□□□ -0.59
LIG1-201ENST00000263274 FGGYQ96C11 551 aa11.38□□□□□ -0.59
LIG1-201ENST00000263274 VRK1Q99986 396 aaPredicted RBP11.38□□□□□ -0.59
LIG1-201ENST00000263274 MFRPQ9BY79 579 aa11.38□□□□□ -0.59
LIG1-201ENST00000263274 EVA1AQ9H8M9 152 aa11.38□□□□□ -0.59
LIG1-201ENST00000263274 MED29Q9NX70 200 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms