RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 LPAR6P43657 344 aa12.96□□□□□ -0.34
SDC1-201ENST00000254351 ELOCQ15369 112 aa12.96□□□□□ -0.34
SDC1-201ENST00000254351 PLPP4Q5VZY2 271 aa12.96□□□□□ -0.34
SDC1-201ENST00000254351 TRAPPC6BQ86SZ2 158 aa12.96□□□□□ -0.34
SDC1-201ENST00000254351 CDRT4Q8N9R6 151 aa12.96□□□□□ -0.34
SDC1-201ENST00000254351 C15orf40Q8WUR7 153 aa12.96□□□□□ -0.34
SDC1-201ENST00000254351 SLC25A36Q96CQ1 311 aa12.96□□□□□ -0.34
SDC1-201ENST00000254351 GRHPRQ9UBQ7 328 aa12.96□□□□□ -0.34
SDC1-201ENST00000254351 C1QTNF3-AMACRE9PGA6 284 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 CLN5O75503 358 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 SNAPC5O75971 98 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 STK17BO94768 372 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 YIF1AO95070 293 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 CD8AP01732 235 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 GNB3P16520 340 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 ITGA3P26006 1051 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 GRK6P43250 576 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 NPY4RP50391 375 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 PMPCAQ10713 525 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 ALG10Q5BKT4 473 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 ULK3Q6PHR2 472 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 MISPQ8IVT2 679 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 RCC2Q9P258 522 aaKnown RBP12.95□□□□□ -0.34
SDC1-201ENST00000254351 EPHA6Q9UF33 1036 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 EML5Q05BV3 1969 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 H0YIZ8 118 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 ZNF432O94892 652 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 IFNA6P05013 189 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 ADH5P11766 374 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 HTR2CP28335 458 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 DCDP81605 110 aaKnown RBP12.95□□□□□ -0.34
SDC1-201ENST00000254351 DPY19L2P2Q6ZN68 376 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 FJX1Q86VR8 437 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 ACKR4Q9NPB9 350 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 AMDHD2Q9Y303 409 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 PRUNE2Q8WUY3 3088 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 A0A1W2PP55 124 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 KLK3P07288 261 aaPredicted RBP12.95□□□□□ -0.34
SDC1-201ENST00000254351 SFTPBP07988 381 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 PJVKQ0ZLH3 352 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 IRF4Q15306 451 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 RPL7L1Q6DKI1 246 aaKnown RBP12.95□□□□□ -0.34
SDC1-201ENST00000254351 ASPHD2Q6ICH7 369 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 FBXO42Q6P3S6 717 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 DHRS11Q6UWP2 260 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 LYG2Q86SG7 212 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 METTL27Q8N6F8 245 aaPredicted RBP12.95□□□□□ -0.34
SDC1-201ENST00000254351 FRMD1Q8N878 549 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 SLC25A44Q96H78 314 aaPredicted RBP12.95□□□□□ -0.34
SDC1-201ENST00000254351 PAPOLGQ9BWT3 736 aaKnown RBP12.95□□□□□ -0.34
SDC1-201ENST00000254351 DHDHQ9UQ10 334 aa12.95□□□□□ -0.34
SDC1-201ENST00000254351 TICRRQ7Z2Z1 1910 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 A0A1B0GTI1 187 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 HTR3BO95264 441 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 CTSBP07858 339 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 HOXB5P09067 269 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 DPTQ07507 201 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 MFGE8Q08431 387 aaPredicted RBP12.94□□□□□ -0.34
SDC1-201ENST00000254351 VWA2Q5GFL6 755 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 ZNF813Q6ZN06 617 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 SLC16A9Q7RTY1 509 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 SFTPA2Q8IWL1 248 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 KDM8Q8N371 416 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 MFSD9Q8NBP5 474 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 OR2I1PQ8NGU4 316 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 OR2L8Q8NGY9 312 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 AKR7LQ8NHP1 331 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 CD300LFQ8TDQ1 290 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 HIST1H2BAQ96A08 127 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 JSRP1Q96MG2 331 aaPredicted RBP12.94□□□□□ -0.34
SDC1-201ENST00000254351 SLC25A21Q9BQT8 299 aaPredicted RBP12.94□□□□□ -0.34
SDC1-201ENST00000254351 METTL8Q9H825 291 aaKnown RBP12.94□□□□□ -0.34
SDC1-201ENST00000254351 FN3KRPQ9HA64 309 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 LTBP2Q14767 1821 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 MYO9BQ13459 2157 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 OIP5O43482 229 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 MPZL1O95297 269 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 EFEMP2O95967 443 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 ZNF735P0CB33 412 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 EIF1AXP47813 144 aaKnown RBP12.94□□□□□ -0.34
SDC1-201ENST00000254351 PPM1FP49593 454 aaPredicted RBP12.94□□□□□ -0.34
SDC1-201ENST00000254351 ECH1Q13011 328 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 ENPP2Q13822 863 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 GGTLC2Q14390 218 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 ELAVL3Q14576 367 aaKnown RBP12.94□□□□□ -0.34
SDC1-201ENST00000254351 ZNF345Q14585 488 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 SGCAQ16586 387 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 CDCP2Q5VXM1 449 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 LCN10Q6JVE6 187 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.94□□□□□ -0.34
SDC1-201ENST00000254351 MAFIPQ8WZ33 124 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 PHYHIPQ92561 330 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 COX14Q96I36 57 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 SEC11CQ9BY50 192 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 TRIM2Q9C040 744 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 NOTCH4Q99466 2003 aa12.94□□□□□ -0.34
SDC1-201ENST00000254351 C5orf52A6NGY3 159 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 OR6A2O95222 327 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 APBB3O95704 486 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 CD2P06729 351 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms