RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 TMEM204Q9BSN7 226 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 METTL17Q9H7H0 456 aaPredicted RBP3.26□□□□□ -1.89
SCN1A-221ENST00000641996 TAF9BQ9HBM6 251 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 SLCO3A1Q9UIG8 710 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 IKZF2Q9UKS7 526 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 SPIN1Q9Y657 262 aaPredicted RBP3.26□□□□□ -1.89
SCN1A-221ENST00000641996 ZMYM4Q5VZL5 1548 aa3.26□□□□□ -1.89
SCN1A-221ENST00000641996 HPP00738 406 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 HPRP00739 348 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 COX7A2P14406 83 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 HIST1H1TP22492 207 aaPredicted RBP3.25□□□□□ -1.89
SCN1A-221ENST00000641996 EDNRBP24530 442 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 AGTR2P50052 363 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 PABPC1L2AQ5JQF8 200 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 BLOC1S3Q6QNY0 202 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 SMIM5Q71RC9 77 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 CALHM1Q8IU99 346 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 OR8D4Q8NGM9 314 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 QTRT1Q9BXR0 403 aaKnown RBP3.25□□□□□ -1.89
SCN1A-221ENST00000641996 AMBRA1Q9C0C7 1298 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 TREX1Q9NSU2 369 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 FNDC3AQ9Y2H6 1198 aaKnown RBP3.25□□□□□ -1.89
SCN1A-221ENST00000641996 PSME4Q14997 1843 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 H7BYZ3 331 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 HIST1H2AGP0C0S8 130 aaPredicted RBP3.25□□□□□ -1.89
SCN1A-221ENST00000641996 HIST1H2ADP20671 130 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 CST5P28325 142 aaPredicted RBP3.25□□□□□ -1.89
SCN1A-221ENST00000641996 NMBRP28336 390 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 LSM11P83369 360 aaKnown RBP eCLIP3.25□□□□□ -1.89
SCN1A-221ENST00000641996 HIST2H2AA3Q6FI13 130 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 AQP11Q8NBQ7 271 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 HIST1H2AHQ96KK5 128 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 HIST1H2AJQ99878 128 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 ACP6Q9NPH0 428 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 ADAMTS5Q9UNA0 930 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 ENTPD2Q9Y5L3 495 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 FGD5Q6ZNL6 1462 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 HSFX3A0A1B0GWH4 333 aaPredicted RBP3.25□□□□□ -1.89
SCN1A-221ENST00000641996 OR5H14A6NHG9 310 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 KLK8O60259 260 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 EIF4E2O60573 245 aaKnown RBP3.25□□□□□ -1.89
SCN1A-221ENST00000641996 CD27P26842 260 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 CD34P28906 385 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 HOXC9P31274 260 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 HRH1P35367 487 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 SLC19A1P41440 591 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 CDK5Q00535 292 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 PAX5Q02548 391 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 HSPB3Q12988 150 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 ADIRFQ15847 76 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 CTU2Q2VPK5 515 aaKnown RBP3.25□□□□□ -1.89
SCN1A-221ENST00000641996 SORCS1Q8WY21 1168 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 ROPN1LQ96C74 230 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 CMTM7Q96FZ5 175 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 TMUB1Q9BVT8 246 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 NRSN2Q9GZP1 204 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 EIF5A2Q9GZV4 153 aaKnown RBP3.25□□□□□ -1.89
SCN1A-221ENST00000641996 OR10A5Q9H207 317 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 CRLS1Q9UJA2 301 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 TMED7Q9Y3B3 224 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 HDGFL3Q9Y3E1 203 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 SELENOKQ9Y6D0 94 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 CFAP74Q9C0B2 1584 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 PRSS23O95084 383 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 TFP02787 698 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 GM2AP17900 193 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 CD96P40200 585 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 REG1BP48304 166 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 LSSP48449 732 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 MMP16P51512 607 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 RPL32P62910 135 aaKnown RBP3.25□□□□□ -1.89
SCN1A-221ENST00000641996 SLC35A2P78381 396 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 SEMG2Q02383 582 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 DLX2Q07687 328 aaPredicted RBP3.25□□□□□ -1.89
SCN1A-221ENST00000641996 OLIG2Q13516 323 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 OPCMLQ14982 345 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 CLLU1Q5K131 121 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 GRASPQ7Z6J2 395 aaPredicted RBP3.25□□□□□ -1.89
SCN1A-221ENST00000641996 CMC1Q7Z7K0 106 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 WDR5BQ86VZ2 330 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 SLC30A8Q8IWU4 369 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 LFNGQ8NES3 379 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 OR13C4Q8NGS5 318 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 KLRG1Q96E93 195 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 ZNF641Q96N77 438 aaPredicted RBP3.25□□□□□ -1.89
SCN1A-221ENST00000641996 MUS81Q96NY9 551 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 OR51I1Q9H343 314 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 ST6GALNAC2Q9UJ37 374 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 ZNF346Q9UL40 294 aaKnown RBP3.25□□□□□ -1.89
SCN1A-221ENST00000641996 LAMP3Q9UQV4 416 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 U3KQE9 123 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 JMJD1CQ15652 2540 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 IFT140Q96RY7 1462 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 A0A0J9YYE9 177 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 ANKRD28O15084 1053 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 TRBC1P01850 177 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 CTSLP07711 333 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 ARL2P36404 184 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 HLCSP50747 726 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 RBX1P62877 108 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms