RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 CT45A3Q8NHU0 189 aa4.57□□□□□ -1.68
SCN1A-218ENST00000640036 OR4C12Q96R67 309 aa4.57□□□□□ -1.68
SCN1A-218ENST00000640036 CSF3RQ99062 836 aa4.57□□□□□ -1.68
SCN1A-218ENST00000640036 GINS3Q9BRX5 216 aa4.57□□□□□ -1.68
SCN1A-218ENST00000640036 SAMD10Q9BYL1 202 aa4.57□□□□□ -1.68
SCN1A-218ENST00000640036 ZNF443Q9Y2A4 671 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-218ENST00000640036 CBY1Q9Y3M2 126 aa4.57□□□□□ -1.68
SCN1A-218ENST00000640036 MED6O75586 246 aa4.57□□□□□ -1.68
SCN1A-218ENST00000640036 HBE1P02100 147 aa4.57□□□□□ -1.68
SCN1A-218ENST00000640036 CPEP16870 476 aa4.57□□□□□ -1.68
SCN1A-218ENST00000640036 FPR3P25089 353 aa4.57□□□□□ -1.68
SCN1A-218ENST00000640036 SRPXP78539 464 aa4.57□□□□□ -1.68
SCN1A-218ENST00000640036 HABP2Q14520 560 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-218ENST00000640036 METTL4Q8N3J2 472 aa4.57□□□□□ -1.68
SCN1A-218ENST00000640036 ARL11Q969Q4 196 aa4.57□□□□□ -1.68
SCN1A-218ENST00000640036 TSSK2Q96PF2 358 aa4.57□□□□□ -1.68
SCN1A-218ENST00000640036 IER3IP1Q9Y5U9 82 aa4.57□□□□□ -1.68
SCN1A-218ENST00000640036 A0A1W2PNR3 127 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 SCGB1D2O95969 90 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 GHRHP01286 108 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 CTSLP07711 333 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 SPP1P10451 314 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 SLC2A2P11168 524 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-218ENST00000640036 OR1E2P47887 323 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 PSMA6P60900 246 aaKnown RBP4.56□□□□□ -1.68
SCN1A-218ENST00000640036 BTG2P78543 158 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 NPSR1Q6W5P4 371 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 IDO2Q6ZQW0 420 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 SFTPA2Q8IWL1 248 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 SFTPA1Q8IWL2 248 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 TMEM151AQ8N4L1 468 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 OR10G3Q8NGC4 313 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 APIPQ96GX9 242 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 PDLIM5Q96HC4 596 aaKnown RBP4.56□□□□□ -1.68
SCN1A-218ENST00000640036 NUDT16L1Q9BRJ7 211 aaKnown RBP4.56□□□□□ -1.68
SCN1A-218ENST00000640036 EIF5A2Q9GZV4 153 aaKnown RBP4.56□□□□□ -1.68
SCN1A-218ENST00000640036 SLC25A31Q9H0C2 315 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 SPACA1Q9HBV2 294 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 TUBG2Q9NRH3 451 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 PPP1R3CQ9UQK1 317 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 FABP12A6NFH5 140 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 FRG2CA6NGY1 282 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 SOX14O95416 240 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 MBP02144 154 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 ZNF182P17025 639 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-218ENST00000640036 ECI1P42126 302 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 PITPNBP48739 271 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 RANP62826 216 aaKnown RBP4.56□□□□□ -1.68
SCN1A-218ENST00000640036 DEFB121Q5J5C9 76 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 PRAMEF9Q5VWM5 478 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 STEAP4Q687X5 459 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 C18orf63Q68DL7 685 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 SLC48A1Q6P1K1 146 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 PLXDC2Q6UX71 529 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 OR2M7Q8NG81 312 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 WDR20Q8TBZ3 569 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 FAM46BQ96A09 425 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 OR52B2Q96RD2 323 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 KCNA7Q96RP8 456 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 SORBS1Q9BX66 1292 aaKnown RBP4.56□□□□□ -1.68
SCN1A-218ENST00000640036 MMP25Q9NPA2 562 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 A3GALT2U3KPV4 340 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 FREM3P0C091 2139 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 H0YIV9 168 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 ADAM20O43506 726 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 AQP8O94778 261 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 PPP1R3DO95685 299 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 HOXB3P14651 431 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-218ENST00000640036 RAB1AP62820 205 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 SLC35A2P78381 396 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 KCNMB1Q16558 191 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 SYT14P1Q58G82 188 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 FAM122CQ6P4D5 195 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 TMEM130Q8N3G9 435 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 ARRDC2Q8TBH0 407 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 DCUN1D4Q92564 292 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 SIGLEC10Q96LC7 697 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 LRFN5Q96NI6 719 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 RDH12Q96NR8 316 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 GPR61Q9BZJ8 451 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 KIF13BQ9NQT8 1826 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 TMEM74BQ9NUR3 256 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 NTMQ9P121 344 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 ZNF69Q9UC07 566 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 SF3B6Q9Y3B4 125 aaKnown RBP4.56□□□□□ -1.68
SCN1A-218ENST00000640036 HSPB11Q9Y547 144 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 A0A0A6YYJ9 748 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 PCP4L1A6NKN8 68 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 AGAP14A8MT82 685 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 XRCC2O43543 280 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 KNG1P01042 644 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 SLC2A1P11166 492 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 FGF3P11487 239 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-218ENST00000640036 BLVRBP30043 206 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-218ENST00000640036 DHODHQ02127 395 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 P2RY6Q15077 328 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 HES5Q5TA89 166 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 ZBTB46Q86UZ6 589 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 ACBD7Q8N6N7 88 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 FADS6Q8N9I5 356 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms