RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-223ENST00000637823 KRT77Q7Z794 578 aa10.38□□□□□ -0.75
CLN6-223ENST00000637823 ATCAYQ86WG3 371 aa10.38□□□□□ -0.75
CLN6-223ENST00000637823 ZNF679Q8IYX0 411 aa10.38□□□□□ -0.75
CLN6-223ENST00000637823 YIPF7Q8N8F6 280 aa10.38□□□□□ -0.75
CLN6-223ENST00000637823 OR2AJ1Q8NGZ0 328 aa10.38□□□□□ -0.75
CLN6-223ENST00000637823 NABP1Q96AH0 204 aa10.38□□□□□ -0.75
CLN6-223ENST00000637823 SNRNP40Q96DI7 357 aaKnown RBP10.38□□□□□ -0.75
CLN6-223ENST00000637823 OR8B4Q96RC9 309 aa10.38□□□□□ -0.75
CLN6-223ENST00000637823 SLX1AQ9BQ83 275 aa10.38□□□□□ -0.75
CLN6-223ENST00000637823 NAA50Q9GZZ1 169 aaKnown RBP10.38□□□□□ -0.75
CLN6-223ENST00000637823 SIAEQ9HAT2 523 aa10.38□□□□□ -0.75
CLN6-223ENST00000637823 EMC7Q9NPA0 242 aa10.38□□□□□ -0.75
CLN6-223ENST00000637823 NDUFB11Q9NX14 153 aa10.38□□□□□ -0.75
CLN6-223ENST00000637823 UPB1Q9UBR1 384 aa10.38□□□□□ -0.75
CLN6-223ENST00000637823 MRM2Q9UI43 246 aaKnown RBP10.38□□□□□ -0.75
CLN6-223ENST00000637823 IKZF2Q9UKS7 526 aa10.38□□□□□ -0.75
CLN6-223ENST00000637823 LHFPL6Q9Y693 200 aa10.38□□□□□ -0.75
CLN6-223ENST00000637823 INTS1Q8N201 2190 aaKnown RBP10.38□□□□□ -0.75
CLN6-223ENST00000637823 MBD3L4A6NDZ8 208 aaPredicted RBP10.37□□□□□ -0.75
CLN6-223ENST00000637823 MBD3L3A6NE82 208 aaPredicted RBP10.37□□□□□ -0.75
CLN6-223ENST00000637823 MBD3L5A6NJ08 208 aaPredicted RBP10.37□□□□□ -0.75
CLN6-223ENST00000637823 FIGNL2A6NMB9 653 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 PRR32B1ATL7 298 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 ZNF587BE7ETH6 402 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 E9PI62 339 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 MAGEB4O15481 346 aaPredicted RBP10.37□□□□□ -0.75
CLN6-223ENST00000637823 PLPP2O43688 288 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 AIREO43918 545 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 ZNF254O75437 659 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 CD1AP06126 327 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 TPOP07202 933 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 CST2P09228 141 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 ABOP16442 354 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 CELP19835 753 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 GADD45AP24522 165 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 PSMA1P25786 263 aaKnown RBP10.37□□□□□ -0.75
CLN6-223ENST00000637823 MAP1BP46821 2468 aaKnown RBP10.37□□□□□ -0.75
CLN6-223ENST00000637823 OR3A2P47893 321 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 TGM4P49221 684 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 GUSBP1Q15486 140 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 CTF1Q16619 201 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 CEACAM16Q2WEN9 425 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 C1orf185Q5T7R7 199 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 OTPQ5XKR4 325 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 RPL22L1Q6P5R6 122 aaKnown RBP10.37□□□□□ -0.75
CLN6-223ENST00000637823 RPTNQ6XPR3 784 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 GDPGP1Q6ZNW5 385 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 RHOUQ7L0Q8 258 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 FAM214BQ7L5A3 538 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 DCXRQ7Z4W1 244 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 LINC00346Q8IVM7 164 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 C9orf106Q8NAJ2 232 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 OR52N5Q8NH56 324 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 MBD3L2Q8NHZ7 208 aaPredicted RBP10.37□□□□□ -0.75
CLN6-223ENST00000637823 ST7LQ8TDW4 575 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 C12orf43Q96C57 262 aaKnown RBP10.37□□□□□ -0.75
CLN6-223ENST00000637823 ZNF837Q96EG3 531 aaPredicted RBP10.37□□□□□ -0.75
CLN6-223ENST00000637823 AMELYQ99218 206 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 ZNF416Q9BWM5 594 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 MROQ9BYG7 248 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 TTTY10Q9BZA0 68 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 C1orf198Q9H425 327 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 ELOVL3Q9HB03 270 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 SLC7A10Q9NS82 523 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 ASF1BQ9NVP2 202 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 TMEM38BQ9NVV0 291 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 SLCO1C1Q9NYB5 712 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 POLR1DQ9Y2S0 133 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 EMC9Q9Y3B6 208 aa10.37□□□□□ -0.75
CLN6-223ENST00000637823 TLN1Q9Y490 2541 aaKnown RBP10.36□□□□□ -0.75
CLN6-223ENST00000637823 H3BMQ9 156 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 PSMD9O00233 223 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 GABARAPO95166 117 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 ABHD16AO95870 558 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 CRHP06850 196 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 OR8G3PP0DMU2 310 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 EDNRAP25101 427 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 GABRA5P31644 462 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 HIST1H3AP68431 136 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 ENDOGQ14249 297 aaKnown RBP10.36□□□□□ -0.75
CLN6-223ENST00000637823 TRAM1Q15629 374 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 EIF2S3LQ2VIR3 472 aaKnown RBP10.36□□□□□ -0.75
CLN6-223ENST00000637823 CNPY1Q3B7I2 92 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 NRN1LQ496H8 165 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 HIST2H3PS2Q5TEC6 136 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 LIPNQ5VXI9 398 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 FBXW9Q5XUX1 488 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 DMKNQ6E0U4 476 aaPredicted RBP10.36□□□□□ -0.75
CLN6-223ENST00000637823 RTL6Q6ICC9 239 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 FDX2Q6P4F2 183 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 CORO6Q6QEF8 472 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 GFRALQ6UXV0 394 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 HIST2H3AQ71DI3 136 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.36□□□□□ -0.75
CLN6-223ENST00000637823 CD163Q86VB7 1156 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.36□□□□□ -0.75
CLN6-223ENST00000637823 UBE2J2Q8N2K1 259 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 ZFP41Q8N8Y5 198 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 GJC3Q8NFK1 279 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 RNF133Q8WVZ7 376 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms