RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 RAB1BQ9H0U4 201 aa16.56■□□□□ 0.24
CLN3-260ENST00000637578 INAFM1C9JVW0 142 aa16.55■□□□□ 0.24
CLN3-260ENST00000637578 NDUFS8O00217 210 aa16.55■□□□□ 0.24
CLN3-260ENST00000637578 PTHP01270 115 aa16.55■□□□□ 0.24
CLN3-260ENST00000637578 CD14P08571 375 aa16.55■□□□□ 0.24
CLN3-260ENST00000637578 RPL4P36578 427 aaKnown RBP16.55■□□□□ 0.24
CLN3-260ENST00000637578 GALK2Q01415 458 aa16.55■□□□□ 0.24
CLN3-260ENST00000637578 CD47Q08722 323 aa16.55■□□□□ 0.24
CLN3-260ENST00000637578 SMARCD3Q6STE5 483 aa16.55■□□□□ 0.24
CLN3-260ENST00000637578 ZNF771Q7L3S4 317 aaPredicted RBP16.55■□□□□ 0.24
CLN3-260ENST00000637578 FAM122BQ7Z309 247 aa16.55■□□□□ 0.24
CLN3-260ENST00000637578 LRRC18Q8N456 261 aa16.55■□□□□ 0.24
CLN3-260ENST00000637578 PAQR4Q8N4S7 273 aaPredicted RBP16.55■□□□□ 0.24
CLN3-260ENST00000637578 OR52D1Q9H346 318 aa16.55■□□□□ 0.24
CLN3-260ENST00000637578 RNF121Q9H920 327 aa16.55■□□□□ 0.24
CLN3-260ENST00000637578 ZNF23P17027 643 aa16.55■□□□□ 0.24
CLN3-260ENST00000637578 PDLIM4P50479 330 aa16.55■□□□□ 0.24
CLN3-260ENST00000637578 RPS23P62266 143 aaKnown RBP16.55■□□□□ 0.24
CLN3-260ENST00000637578 ERVK-25P63136 954 aa16.55■□□□□ 0.24
CLN3-260ENST00000637578 RASSF6Q6ZTQ3 369 aa16.55■□□□□ 0.24
CLN3-260ENST00000637578 HIPK1Q86Z02 1210 aa16.55■□□□□ 0.24
CLN3-260ENST00000637578 NEU4Q8WWR8 484 aaPredicted RBP16.55■□□□□ 0.24
CLN3-260ENST00000637578 NSMAFQ92636 917 aa16.55■□□□□ 0.24
CLN3-260ENST00000637578 GPX7Q96SL4 187 aaPredicted RBP16.55■□□□□ 0.24
CLN3-260ENST00000637578 NDEL1Q9GZM8 345 aa16.55■□□□□ 0.24
CLN3-260ENST00000637578 OAZ3Q9UMX2 235 aa16.55■□□□□ 0.24
CLN3-260ENST00000637578 ADAM18Q9Y3Q7 739 aa16.55■□□□□ 0.24
CLN3-260ENST00000637578 CDH10Q9Y6N8 788 aa16.55■□□□□ 0.24
CLN3-260ENST00000637578 ANK3Q12955 4377 aaKnown RBP16.54■□□□□ 0.24
CLN3-260ENST00000637578 LOC390937A0A1W2PQ73 354 aa16.54■□□□□ 0.24
CLN3-260ENST00000637578 SLC22A23A1A5C7 686 aa16.54■□□□□ 0.24
CLN3-260ENST00000637578 SAC3D1A6NKF1 404 aa16.54■□□□□ 0.24
CLN3-260ENST00000637578 G3V2T6 193 aa16.54■□□□□ 0.24
CLN3-260ENST00000637578 SYNGR3O43761 229 aa16.54■□□□□ 0.24
CLN3-260ENST00000637578 TLX2O43763 284 aaPredicted RBP16.54■□□□□ 0.24
CLN3-260ENST00000637578 AHCYL1O43865 530 aa16.54■□□□□ 0.24
CLN3-260ENST00000637578 ANXA8P13928 327 aa16.54■□□□□ 0.24
CLN3-260ENST00000637578 GSTM3P21266 225 aa16.54■□□□□ 0.24
CLN3-260ENST00000637578 PCSK6P29122 969 aa16.54■□□□□ 0.24
CLN3-260ENST00000637578 RFX4Q33E94 735 aa16.54■□□□□ 0.24
CLN3-260ENST00000637578 CD300LDQ6UXZ3 194 aa16.54■□□□□ 0.24
CLN3-260ENST00000637578 ZDHHC13Q8IUH4 622 aa16.54■□□□□ 0.24
CLN3-260ENST00000637578 ZCCHC24Q8N2G6 241 aaKnown RBP16.54■□□□□ 0.24
CLN3-260ENST00000637578 ATG16L2Q8NAA4 619 aa16.54■□□□□ 0.24
CLN3-260ENST00000637578 ICA1LQ8NDH6 482 aa16.54■□□□□ 0.24
CLN3-260ENST00000637578 CPEB3Q8NE35 698 aaKnown RBP16.54■□□□□ 0.24
CLN3-260ENST00000637578 SAMD8Q96LT4 415 aa16.54■□□□□ 0.24
CLN3-260ENST00000637578 EGLN3Q9H6Z9 239 aa16.54■□□□□ 0.24
CLN3-260ENST00000637578 RTTNQ86VV8 2226 aa16.53■□□□□ 0.24
CLN3-260ENST00000637578 SOX14O95416 240 aa16.53■□□□□ 0.24
CLN3-260ENST00000637578 TP53P04637 393 aaPredicted RBP16.53■□□□□ 0.24
CLN3-260ENST00000637578 CCL2P13500 99 aa16.53■□□□□ 0.24
CLN3-260ENST00000637578 ELF3P78545 371 aaPredicted RBP16.53■□□□□ 0.24
CLN3-260ENST00000637578 PPP2R2BQ00005 443 aa16.53■□□□□ 0.24
CLN3-260ENST00000637578 PLP2Q04941 152 aa16.53■□□□□ 0.24
CLN3-260ENST00000637578 TMEM249Q2WGJ8 235 aa16.53■□□□□ 0.24
CLN3-260ENST00000637578 PABPC1L2AQ5JQF8 200 aa16.53■□□□□ 0.24
CLN3-260ENST00000637578 FAHD1Q6P587 224 aa16.53■□□□□ 0.24
CLN3-260ENST00000637578 LRP11Q86VZ4 500 aa16.53■□□□□ 0.24
CLN3-260ENST00000637578 PQLC1Q8N2U9 271 aa16.53■□□□□ 0.24
CLN3-260ENST00000637578 OR1J2Q8NGS2 313 aa16.53■□□□□ 0.24
CLN3-260ENST00000637578 FOXN4Q96NZ1 517 aa16.53■□□□□ 0.24
CLN3-260ENST00000637578 PLA2G12AQ9BZM1 189 aa16.53■□□□□ 0.24
CLN3-260ENST00000637578 KCNN2Q9H2S1 579 aa16.53■□□□□ 0.24
CLN3-260ENST00000637578 NRIP3Q9NQ35 241 aa16.53■□□□□ 0.24
CLN3-260ENST00000637578 GRHPRQ9UBQ7 328 aa16.53■□□□□ 0.24
CLN3-260ENST00000637578 IQCMA0A1B0GVH7 501 aa16.52■□□□□ 0.24
CLN3-260ENST00000637578 ADRA2AP08913 450 aa16.52■□□□□ 0.24
CLN3-260ENST00000637578 CST2P09228 141 aa16.52■□□□□ 0.24
CLN3-260ENST00000637578 ZNF32P17041 273 aa16.52■□□□□ 0.24
CLN3-260ENST00000637578 USF1P22415 310 aaPredicted RBP16.52■□□□□ 0.24
CLN3-260ENST00000637578 SLC6A6P31641 620 aa16.52■□□□□ 0.24
CLN3-260ENST00000637578 NR4A2P43354 598 aa16.52■□□□□ 0.24
CLN3-260ENST00000637578 COX10Q12887 443 aa16.52■□□□□ 0.24
CLN3-260ENST00000637578 SGCAQ16586 387 aa16.52■□□□□ 0.24
CLN3-260ENST00000637578 TBC1D28Q2M2D7 210 aa16.52■□□□□ 0.24
CLN3-260ENST00000637578 MESTQ5EB52 335 aa16.52■□□□□ 0.24
CLN3-260ENST00000637578 CLEC12AQ5QGZ9 265 aa16.52■□□□□ 0.24
CLN3-260ENST00000637578 DPY19L2P2Q6ZN68 376 aa16.52■□□□□ 0.24
CLN3-260ENST00000637578 OR8D4Q8NGM9 314 aa16.52■□□□□ 0.24
CLN3-260ENST00000637578 Q96M85 177 aa16.52■□□□□ 0.24
CLN3-260ENST00000637578 GABARAPL1Q9H0R8 117 aa16.52■□□□□ 0.24
CLN3-260ENST00000637578 ZNF556Q9HAH1 456 aa16.52■□□□□ 0.24
CLN3-260ENST00000637578 IL20Q9NYY1 176 aa16.52■□□□□ 0.24
CLN3-260ENST00000637578 KIF17Q9P2E2 1029 aa16.52■□□□□ 0.24
CLN3-260ENST00000637578 REV1Q9UBZ9 1251 aa16.52■□□□□ 0.24
CLN3-260ENST00000637578 PPP1R3DO95685 299 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 BAG2O95816 211 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 ERCC1P07992 297 aaPredicted RBP16.51■□□□□ 0.23
CLN3-260ENST00000637578 ZNF250P15622 560 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 GIFP27352 417 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 APEX1P27695 318 aaKnown RBP16.51■□□□□ 0.23
CLN3-260ENST00000637578 LAP3P28838 519 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 DAPP51397 102 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 UCP2P55851 309 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 PSG4Q00888 419 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 RPL13AP3Q6NVV1 102 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 POM121L2Q96KW2 1035 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 SYT3Q9BQG1 590 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 PIMREGQ9BSJ6 248 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms