RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-223	ENST00000629179	VSX1	Q9NZR4	365 aa	Predicted RBP	12.21	□□□□□ -0.45
PNKP-223	ENST00000629179	DUSP13	Q9UII6	198 aa		12.21	□□□□□ -0.45
PNKP-223	ENST00000629179	COA3	Q9Y2R0	106 aa	Predicted RBP	12.21	□□□□□ -0.45
PNKP-223	ENST00000629179	TIMM10B	Q9Y5J6	103 aa		12.21	□□□□□ -0.45
PNKP-223	ENST00000629179	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	12.21	□□□□□ -0.46	1e-6	■■■■■ 28.3
PNKP-223	ENST00000629179	C5orf49	A4QMS7	147 aa		12.2	□□□□□ -0.46
PNKP-223	ENST00000629179	C12orf71	A8MTZ7	269 aa		12.2	□□□□□ -0.46
PNKP-223	ENST00000629179	SYNGR3	O43761	229 aa		12.2	□□□□□ -0.46
PNKP-223	ENST00000629179	KHDRBS3	O75525	346 aa	Known RBP	12.2	□□□□□ -0.46
PNKP-223	ENST00000629179	MPZL1	O95297	269 aa		12.2	□□□□□ -0.46
PNKP-223	ENST00000629179	CLPTM1	O96005	669 aa		12.2	□□□□□ -0.46
PNKP-223	ENST00000629179	LCK	P06239	509 aa		12.2	□□□□□ -0.46
PNKP-223	ENST00000629179	CSF3	P09919	207 aa		12.2	□□□□□ -0.46
PNKP-223	ENST00000629179	SLC6A6	P31641	620 aa		12.2	□□□□□ -0.46
PNKP-223	ENST00000629179	ALDH3B1	P43353	468 aa		12.2	□□□□□ -0.46
PNKP-223	ENST00000629179	PDLIM4	P50479	330 aa		12.2	□□□□□ -0.46
PNKP-223	ENST00000629179	PCBD1	P61457	104 aa		12.2	□□□□□ -0.46
PNKP-223	ENST00000629179	DBP	Q10586	325 aa	Predicted RBP	12.2	□□□□□ -0.46
PNKP-223	ENST00000629179	MAD2L1BP	Q15013	274 aa	Predicted RBP	12.2	□□□□□ -0.46
PNKP-223	ENST00000629179	FAM98B	Q52LJ0	330 aa	Known RBP	12.2	□□□□□ -0.46
PNKP-223	ENST00000629179	OR2T5	Q6IEZ7	315 aa		12.2	□□□□□ -0.46
PNKP-223	ENST00000629179	ADCK1	Q86TW2	530 aa		12.2	□□□□□ -0.46
PNKP-223	ENST00000629179	ICA1L	Q8NDH6	482 aa		12.2	□□□□□ -0.46
PNKP-223	ENST00000629179	OR2T29	Q8NH02	315 aa		12.2	□□□□□ -0.46
PNKP-223	ENST00000629179	SLC7A6OS	Q96CW6	309 aa	Predicted RBP	12.2	□□□□□ -0.46
PNKP-223	ENST00000629179	TSSK2	Q96PF2	358 aa		12.2	□□□□□ -0.46
PNKP-223	ENST00000629179	TRIM15	Q9C019	465 aa		12.2	□□□□□ -0.46
PNKP-223	ENST00000629179	TPK1	Q9H3S4	243 aa		12.2	□□□□□ -0.46
PNKP-223	ENST00000629179	REV1	Q9UBZ9	1251 aa		12.2	□□□□□ -0.46
PNKP-223	ENST00000629179	FBXO9	Q9UK97	447 aa	Predicted RBP	12.2	□□□□□ -0.46
PNKP-223	ENST00000629179		M0R233	179 aa		12.19	□□□□□ -0.46
PNKP-223	ENST00000629179	DCTN6	O00399	190 aa		12.19	□□□□□ -0.46
PNKP-223	ENST00000629179	ARPC3	O15145	178 aa		12.19	□□□□□ -0.46
PNKP-223	ENST00000629179	GYG2	O15488	501 aa		12.19	□□□□□ -0.46
PNKP-223	ENST00000629179	CCNB2	O95067	398 aa		12.19	□□□□□ -0.46
PNKP-223	ENST00000629179	STAMBP	O95630	424 aa		12.19	□□□□□ -0.46
PNKP-223	ENST00000629179	GPANK1	O95872	356 aa		12.19	□□□□□ -0.46
PNKP-223	ENST00000629179	GAST	P01350	101 aa		12.19	□□□□□ -0.46
PNKP-223	ENST00000629179	APEH	P13798	732 aa	Known RBP	12.19	□□□□□ -0.46
PNKP-223	ENST00000629179	SLC25A16	P16260	332 aa		12.19	□□□□□ -0.46
PNKP-223	ENST00000629179	HIST1H1C	P16403	213 aa	Known RBP	12.19	□□□□□ -0.46
PNKP-223	ENST00000629179	PCSK6	P29122	969 aa		12.19	□□□□□ -0.46
PNKP-223	ENST00000629179	WNT5A	P41221	380 aa		12.19	□□□□□ -0.46
PNKP-223	ENST00000629179	RAD52	P43351	418 aa		12.19	□□□□□ -0.46
PNKP-223	ENST00000629179	GDI2	P50395	445 aa	Known RBP	12.19	□□□□□ -0.46
PNKP-223	ENST00000629179	TRAP1	Q12931	704 aa	Known RBP	12.19	□□□□□ -0.46
PNKP-223	ENST00000629179	ALKBH6	Q3KRA9	238 aa		12.19	□□□□□ -0.46
PNKP-223	ENST00000629179	ZNF770	Q6IQ21	691 aa	Predicted RBP	12.19	□□□□□ -0.46
PNKP-223	ENST00000629179	LEG1	Q6P5S2	330 aa		12.19	□□□□□ -0.46
PNKP-223	ENST00000629179	ZNF620	Q6ZNG0	422 aa		12.19	□□□□□ -0.46
PNKP-223	ENST00000629179	ALDH16A1	Q8IZ83	802 aa		12.19	□□□□□ -0.46
PNKP-223	ENST00000629179	ZNF101	Q8IZC7	436 aa		12.19	□□□□□ -0.46
PNKP-223	ENST00000629179	OR4K13	Q8NH42	304 aa		12.19	□□□□□ -0.46
PNKP-223	ENST00000629179	NEU4	Q8WWR8	484 aa	Predicted RBP	12.19	□□□□□ -0.46
PNKP-223	ENST00000629179	C11orf40	Q8WZ69	217 aa		12.19	□□□□□ -0.46
PNKP-223	ENST00000629179	POM121	Q96HA1	1249 aa		12.19	□□□□□ -0.46
PNKP-223	ENST00000629179	NMNAT3	Q96T66	252 aa		12.19	□□□□□ -0.46
PNKP-223	ENST00000629179	BCL2L14	Q9BZR8	327 aa		12.19	□□□□□ -0.46
PNKP-223	ENST00000629179	EGLN3	Q9H6Z9	239 aa		12.19	□□□□□ -0.46
PNKP-223	ENST00000629179	SRA1	Q9HD15	236 aa	Known RBP	12.19	□□□□□ -0.46
PNKP-223	ENST00000629179		U3KQV3	271 aa		12.19	□□□□□ -0.46
PNKP-223	ENST00000629179		A0A1W2PPW3	197 aa		12.18	□□□□□ -0.46
PNKP-223	ENST00000629179	VWC2L	B2RUY7	222 aa		12.18	□□□□□ -0.46
PNKP-223	ENST00000629179	ERCC1	P07992	297 aa	Predicted RBP	12.18	□□□□□ -0.46
PNKP-223	ENST00000629179	RAP2A	P10114	183 aa		12.18	□□□□□ -0.46
PNKP-223	ENST00000629179	DAO	P14920	347 aa		12.18	□□□□□ -0.46
PNKP-223	ENST00000629179	ZNF250	P15622	560 aa		12.18	□□□□□ -0.46
PNKP-223	ENST00000629179	CENPA	P49450	140 aa		12.18	□□□□□ -0.46
PNKP-223	ENST00000629179	CLEC12A	Q5QGZ9	265 aa		12.18	□□□□□ -0.46
PNKP-223	ENST00000629179	SLC35F1	Q5T1Q4	408 aa		12.18	□□□□□ -0.46
PNKP-223	ENST00000629179	PGM2L1	Q6PCE3	622 aa		12.18	□□□□□ -0.46
PNKP-223	ENST00000629179	SYT9	Q86SS6	491 aa		12.18	□□□□□ -0.46
PNKP-223	ENST00000629179	JAZF1	Q86VZ6	243 aa		12.18	□□□□□ -0.46
PNKP-223	ENST00000629179	GLB1L2	Q8IW92	636 aa		12.18	□□□□□ -0.46
PNKP-223	ENST00000629179	ADGRG5	Q8IZF4	528 aa		12.18	□□□□□ -0.46
PNKP-223	ENST00000629179	LINC00471	Q8N535	108 aa		12.18	□□□□□ -0.46
PNKP-223	ENST00000629179	OR1J1	Q8NGS3	322 aa		12.18	□□□□□ -0.46
PNKP-223	ENST00000629179	SYNPR	Q8TBG9	265 aa		12.18	□□□□□ -0.46
PNKP-223	ENST00000629179	POP5	Q969H6	163 aa	Known RBP	12.18	□□□□□ -0.46
PNKP-223	ENST00000629179	MS4A5	Q9H3V2	200 aa		12.18	□□□□□ -0.46
PNKP-223	ENST00000629179	REEP1	Q9H902	201 aa		12.18	□□□□□ -0.46
PNKP-223	ENST00000629179	TAAR3P	Q9P1P4	343 aa		12.18	□□□□□ -0.46
PNKP-223	ENST00000629179	EIF3K	Q9UBQ5	218 aa	Known RBP	12.18	□□□□□ -0.46
PNKP-223	ENST00000629179	B9D1	Q9UPM9	204 aa		12.18	□□□□□ -0.46
PNKP-223	ENST00000629179	SAMHD1	Q9Y3Z3	626 aa	Known RBP	12.18	□□□□□ -0.46
PNKP-223	ENST00000629179	IGLV3-9	A0A075B6K5	115 aa		12.17	□□□□□ -0.46
PNKP-223	ENST00000629179	LOC390937	A0A1W2PQ73	354 aa		12.17	□□□□□ -0.46
PNKP-223	ENST00000629179	INAFM1	C9JVW0	142 aa		12.17	□□□□□ -0.46
PNKP-223	ENST00000629179	LYNX1	G3V0Z9	82 aa		12.17	□□□□□ -0.46
PNKP-223	ENST00000629179	SGCE	O43556	437 aa		12.17	□□□□□ -0.46
PNKP-223	ENST00000629179	IDH3B	O43837	385 aa		12.17	□□□□□ -0.46
PNKP-223	ENST00000629179	REN	P00797	406 aa		12.17	□□□□□ -0.46
PNKP-223	ENST00000629179	NGF	P01138	241 aa		12.17	□□□□□ -0.46
PNKP-223	ENST00000629179	LYNX1	P0DP58	116 aa		12.17	□□□□□ -0.46
PNKP-223	ENST00000629179	NAT2	P11245	290 aa		12.17	□□□□□ -0.46
PNKP-223	ENST00000629179	USF1	P22415	310 aa	Predicted RBP	12.17	□□□□□ -0.46
PNKP-223	ENST00000629179	NOS3	P29474	1203 aa		12.17	□□□□□ -0.46
PNKP-223	ENST00000629179	CRABP1	P29762	137 aa		12.17	□□□□□ -0.46
PNKP-223	ENST00000629179	KLF3	P57682	345 aa	Predicted RBP	12.17	□□□□□ -0.46
PNKP-223	ENST00000629179	SELENOV	P59797	346 aa		12.17	□□□□□ -0.46

Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms