RNA–Protein interactions for RNA: ENST00000622629.4

MSH6-215, Transcript of mutS homolog 6, human

TSL 5 BASIC

Gene MSH6, Length 4,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSH6-215	ENST00000622629	IMPA2	O14732	288 aa		11.64	□□□□□ -0.55
MSH6-215	ENST00000622629	MTRF1	O75570	445 aa	Known RBP	11.64	□□□□□ -0.55
MSH6-215	ENST00000622629	ADRA2A	P08913	450 aa		11.64	□□□□□ -0.55
MSH6-215	ENST00000622629	PET100	P0DJ07	73 aa		11.64	□□□□□ -0.55
MSH6-215	ENST00000622629	GAA	P10253	952 aa		11.64	□□□□□ -0.55
MSH6-215	ENST00000622629	VAMP2	P63027	116 aa		11.64	□□□□□ -0.55
MSH6-215	ENST00000622629	DOC2B	Q14184	412 aa		11.64	□□□□□ -0.55
MSH6-215	ENST00000622629	LYSMD4	Q5XG99	296 aa		11.64	□□□□□ -0.55
MSH6-215	ENST00000622629	TMEM81	Q6P7N7	255 aa		11.64	□□□□□ -0.55
MSH6-215	ENST00000622629	DND1	Q8IYX4	353 aa	Known RBP	11.64	□□□□□ -0.55
MSH6-215	ENST00000622629	RFLNB	Q8N5W9	214 aa		11.64	□□□□□ -0.55
MSH6-215	ENST00000622629	OR4C16	Q8NGL9	310 aa		11.64	□□□□□ -0.55
MSH6-215	ENST00000622629	OR4K15	Q8NH41	348 aa		11.64	□□□□□ -0.55
MSH6-215	ENST00000622629	CCNL2	Q96S94	520 aa	Predicted RBP	11.64	□□□□□ -0.55
MSH6-215	ENST00000622629	SDHC	Q99643	169 aa	Predicted RBP	11.64	□□□□□ -0.55
MSH6-215	ENST00000622629	TMEM59	Q9BXS4	323 aa		11.64	□□□□□ -0.55
MSH6-215	ENST00000622629	GMDS	O60547	372 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	SCGN	O76038	276 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	PPP3CB	P16298	524 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	CXCL3	P19876	107 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	CASR	P41180	1078 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	C3orf33	Q6P1S2	294 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	ZNF585A	Q6P3V2	769 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	ATOH1	Q92858	354 aa	Predicted RBP	11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	BANF2	Q9H503	90 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	OR5V1	Q9UGF6	321 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	GGT3P	A6NGU5	568 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	RAD51D	O75771	328 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	EPPIN	O95925	133 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	HSF1	Q00613	529 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	ZNF117	Q03924	483 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	IL10RA	Q13651	578 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	PLEKHN1	Q494U1	663 aa	Predicted RBP	11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	TMEM164	Q5U3C3	297 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	LANCL3	Q6ZV70	420 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	RAB3C	Q96E17	227 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	AICDA	Q9GZX7	198 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	POFUT1	Q9H488	388 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	CTSF	Q9UBX1	484 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	MRPS28	Q9Y2Q9	187 aa	Known RBP	11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	CEP350	Q5VT06	3117 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	PYCARD-AS1	I3L0S3	204 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629		M0R036	132 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	TNFSF14	O43557	240 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	TMEM127	O75204	238 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	ALOX12B	O75342	701 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	CDON	Q4KMG0	1287 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	CHAC2	Q8WUX2	184 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	ULBP2	Q9BZM5	246 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	TXNIP	Q9H3M7	391 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	KCNE5	Q9UJ90	142 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	HIF3A	Q9Y2N7	669 aa		11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	SF3B6	Q9Y3B4	125 aa	Known RBP	11.63	□□□□□ -0.55
MSH6-215	ENST00000622629	CEP250	Q9BV73	2442 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	SHISA8	B8ZZ34	492 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	NUDT21	O43809	227 aa	Known RBP	11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	HOXC4	P09017	264 aa	Predicted RBP	11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	FCAR	P24071	287 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	CLDN6	P56747	220 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	EGR3	Q06889	387 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	WDR38	Q5JTN6	314 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	C5orf46	Q6UWT4	87 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	MISP	Q8IVT2	679 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	SLC22A24	Q8N4F4	322 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	NPEPL1	Q8NDH3	523 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	JAM3	Q9BX67	310 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	EHF	Q9NZC4	300 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	LMO7DN	F2Z398	122 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629		H7C417	338 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	HSPA12A	O43301	675 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	RECK	O95980	971 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	APOC1	P02654	83 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	PMP2	P02689	132 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	UBC	P0CG48	685 aa	Known RBP	11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	SEC61A1	P61619	476 aa	Known RBP	11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	ZNF141	Q15928	474 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	CLVS2	Q5SYC1	327 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	GABRG1	Q8N1C3	465 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	NUDCD2	Q8WVJ2	157 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	ANKRD10	Q9NXR5	420 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	ASH2L	Q9UBL3	628 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	PCOLCE2	Q9UKZ9	415 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	LSM5	Q9Y4Y9	91 aa	Known RBP	11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	FRG2C	A6NGY1	282 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	PRKACB	P22694	351 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	SLC26A5	P58743	744 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	CYCS	P99999	105 aa	Known RBP	11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	ACSM1	Q08AH1	577 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	ZBTB37	Q5TC79	503 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	NLRC3	Q7RTR2	1065 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	APOBEC4	Q8WW27	367 aa	Known RBP	11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	SPTSSA	Q969W0	71 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	CCDC74A	Q96AQ1	378 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	GDF15	Q99988	308 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	SLC25A21	Q9BQT8	299 aa	Predicted RBP	11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	KLHL13	Q9P2N7	655 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	SVIL	O95425	2214 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	STK17B	O94768	372 aa		11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	GIP	P09681	153 aa	Predicted RBP	11.62	□□□□□ -0.55
MSH6-215	ENST00000622629	ABCD3	P28288	659 aa		11.62	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms