RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 CCDC80Q76M96 950 aa6.75□□□□□ -1.33
CLK1-215ENST00000621181 LINGO2Q7L985 606 aa6.75□□□□□ -1.33
CLK1-215ENST00000621181 MYPOPQ86VE0 399 aaPredicted RBP6.75□□□□□ -1.33
CLK1-215ENST00000621181 FAM169BQ8N8A8 192 aa6.75□□□□□ -1.33
CLK1-215ENST00000621181 OR6Q1Q8NGQ2 317 aa6.75□□□□□ -1.33
CLK1-215ENST00000621181 RORBQ92753 470 aa6.75□□□□□ -1.33
CLK1-215ENST00000621181 NEURL3Q96EH8 262 aa6.75□□□□□ -1.33
CLK1-215ENST00000621181 FAM210AQ96ND0 272 aa6.75□□□□□ -1.33
CLK1-215ENST00000621181 APOL4Q9BPW4 351 aa6.75□□□□□ -1.33
CLK1-215ENST00000621181 THUMPD1Q9NXG2 353 aaKnown RBP6.75□□□□□ -1.33
CLK1-215ENST00000621181 NDUFAF4Q9P032 175 aa6.75□□□□□ -1.33
CLK1-215ENST00000621181 WARS2Q9UGM6 360 aaKnown RBP6.75□□□□□ -1.33
CLK1-215ENST00000621181 PCDHB10Q9UN67 800 aa6.75□□□□□ -1.33
CLK1-215ENST00000621181 SAMHD1Q9Y3Z3 626 aaKnown RBP6.75□□□□□ -1.33
CLK1-215ENST00000621181 GMPPBQ9Y5P6 360 aa6.75□□□□□ -1.33
CLK1-215ENST00000621181 IGHV2OR16-5A0A0B4J2B6 119 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 TMEM129A0AVI4 362 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 FAM157AC9JC47 383 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 BOLA2-SMG1P6H3BVE0 249 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 TRIM77I1YAP6 450 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 M0R082 166 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 M0R233 179 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 HMGN4O00479 90 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 FAAHO00519 579 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 RGS10O43665 173 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 CHRM4P08173 479 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 SAGP10523 405 aaPredicted RBP6.74□□□□□ -1.33
CLK1-215ENST00000621181 CBR1P16152 277 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 PPIBP23284 216 aaKnown RBP6.74□□□□□ -1.33
CLK1-215ENST00000621181 ARR3P36575 388 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 GPR6P46095 362 aaPredicted RBP6.74□□□□□ -1.33
CLK1-215ENST00000621181 LIMS1P48059 325 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 COPZ1P61923 177 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 TEKQ02763 1124 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 ZNF846Q147U1 533 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 SYPL1Q16563 259 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 ANXA8L1Q5VT79 327 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 FAHD2BQ6P2I3 314 aaPredicted RBP6.74□□□□□ -1.33
CLK1-215ENST00000621181 C16orf87Q6PH81 154 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 DEF8Q6ZN54 512 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 PEG10Q86TG7 708 aaKnown RBP6.74□□□□□ -1.33
CLK1-215ENST00000621181 ENTHD1Q8IYW4 607 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 CADM2Q8N3J6 435 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 CLDND2Q8NHS1 167 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 NDNFQ8TB73 568 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 FAM216AQ8WUB2 273 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 IPCEF1Q8WWN9 437 aaPredicted RBP6.74□□□□□ -1.33
CLK1-215ENST00000621181 FAHD2AQ96GK7 314 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 TRNT1Q96Q11 434 aaKnown RBP6.74□□□□□ -1.33
CLK1-215ENST00000621181 SLIRPQ9GZT3 109 aaKnown RBP6.74□□□□□ -1.33
CLK1-215ENST00000621181 SLC38A1Q9H2H9 487 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 NELFAQ9H3P2 528 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 NOX3Q9HBY0 568 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 CCNB1IP1Q9NPC3 277 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 RLIMQ9NVW2 624 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 PSORS1C1Q9UIG5 152 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 RASD1Q9Y272 281 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 SH3GLB1Q9Y371 365 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 CMAHPQ9Y471 501 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 SPEF1Q9Y4P9 236 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 LYVE1Q9Y5Y7 322 aa6.74□□□□□ -1.33
CLK1-215ENST00000621181 TMEM89A2RUT3 159 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 A8MVM7 634 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 FRS3O43559 492 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 SYNGR3O43761 229 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 HNRNPCP07910 306 aaKnown RBP eCLIP6.73□□□□□ -1.33
CLK1-215ENST00000621181 OCM2P0CE71 109 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 OCMP0CE72 109 aaPredicted RBP6.73□□□□□ -1.33
CLK1-215ENST00000621181 GKN3PP0CG01 181 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 NR2F1P10589 423 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 ZNF43P17038 809 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 EPHA1P21709 976 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 GTF2E2P29084 291 aaKnown RBP6.73□□□□□ -1.33
CLK1-215ENST00000621181 GGT2P36268 569 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 ANXA11P50995 505 aaKnown RBP6.73□□□□□ -1.33
CLK1-215ENST00000621181 P2RY4P51582 365 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 HMGA2P52926 109 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 CLDN17P56750 224 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 PCBP3P57721 371 aaKnown RBP6.73□□□□□ -1.33
CLK1-215ENST00000621181 HILS1P60008 231 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 SELENOWP63302 87 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 CSNK2BP67870 215 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 POU3F1Q03052 451 aaPredicted RBP6.73□□□□□ -1.33
CLK1-215ENST00000621181 IRF3Q14653 427 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 RGS21Q2M5E4 152 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 COX20Q5RI15 118 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 C1orf140Q5VVS0 124 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 RNF130Q86XS8 419 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 PEX5LQ8IYB4 626 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 ZNF440Q8IYI8 595 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 GPR137CQ8N3F9 429 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 SVOPQ8N4V2 548 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 IL17RDQ8NFM7 739 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 OR51F2Q8NH61 342 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 RHOXF1Q8NHV9 184 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 MAL2Q969L2 176 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 ITFG2Q969R8 447 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 MRPL24Q96A35 216 aaKnown RBP6.73□□□□□ -1.33
CLK1-215ENST00000621181 TAMM41Q96BW9 452 aa6.73□□□□□ -1.33
CLK1-215ENST00000621181 JMJD8Q96S16 334 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms