RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 PAQR4Q8N4S7 273 aaPredicted RBP9.28□□□□□ -0.92
VPS39-214ENST00000614932 OR13D1Q8NGV5 346 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 OR6N1Q8NGY5 312 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 ABHD4Q8TB40 342 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 SLC7A13Q8TCU3 470 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 PPP1R1CQ8WVI7 109 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 RGP1Q92546 391 aaPredicted RBP9.28□□□□□ -0.92
VPS39-214ENST00000614932 GLYATL1Q969I3 302 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 FRG2BQ96QU4 278 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 ISG20L2Q9H9L3 353 aaKnown RBP9.28□□□□□ -0.92
VPS39-214ENST00000614932 MYOTQ9UBF9 498 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 SH2B3Q9UQQ2 575 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 EXOGQ9Y2C4 368 aaKnown RBP9.28□□□□□ -0.92
VPS39-214ENST00000614932 PCYT1BQ9Y5K3 369 aaPredicted RBP9.28□□□□□ -0.92
VPS39-214ENST00000614932 PLXNB3Q9ULL4 1909 aa9.28□□□□□ -0.92
VPS39-214ENST00000614932 ACOT7O00154 380 aa9.27□□□□□ -0.92
VPS39-214ENST00000614932 PMS2P2O95744 297 aa9.27□□□□□ -0.92
VPS39-214ENST00000614932 GCGP01275 180 aa9.27□□□□□ -0.92
VPS39-214ENST00000614932 IL3P08700 152 aa9.27□□□□□ -0.92
VPS39-214ENST00000614932 PTH2RP49190 550 aa9.27□□□□□ -0.92
VPS39-214ENST00000614932 P2RX1P51575 399 aa9.27□□□□□ -0.92
VPS39-214ENST00000614932 ATP1B3P54709 279 aa9.27□□□□□ -0.92
VPS39-214ENST00000614932 RNF151Q2KHN1 245 aa9.27□□□□□ -0.92
VPS39-214ENST00000614932 AGTRAPQ6RW13 159 aa9.27□□□□□ -0.92
VPS39-214ENST00000614932 ARL9Q6T311 187 aa9.27□□□□□ -0.92
VPS39-214ENST00000614932 SYT12Q8IV01 421 aa9.27□□□□□ -0.92
VPS39-214ENST00000614932 SLC41A3Q96GZ6 507 aa9.27□□□□□ -0.92
VPS39-214ENST00000614932 IL17FQ96PD4 163 aa9.27□□□□□ -0.92
VPS39-214ENST00000614932 RAB33BQ9H082 229 aa9.27□□□□□ -0.92
VPS39-214ENST00000614932 EXO5Q9H790 373 aa9.27□□□□□ -0.92
VPS39-214ENST00000614932 CHST11Q9NPF2 352 aa9.27□□□□□ -0.92
VPS39-214ENST00000614932 ZFP30Q9Y2G7 519 aa9.27□□□□□ -0.92
VPS39-214ENST00000614932 MMP24Q9Y5R2 645 aa9.27□□□□□ -0.92
VPS39-214ENST00000614932 TRIOO75962 3097 aa9.27□□□□□ -0.92
VPS39-214ENST00000614932 NKX6-3A6NJ46 265 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 IRF2P14316 349 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 LBX1P52954 281 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 OR5I1Q13606 314 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 SLC22A25Q6T423 547 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 BTNL8Q6UX41 500 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 VRK2Q86Y07 508 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 METTL21AQ8WXB1 218 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 ASB17Q8WXJ9 295 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 KLK6Q92876 244 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 HLA-CQ95604 372 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 ARRDC3Q96B67 414 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 SGK2Q9HBY8 427 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 LANCL2Q9NS86 450 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 KCNE1BA0A087WTH5 132 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 TRAV1-2A0A0B4J238 106 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 TEX13DA0A0J9YY54 714 aaPredicted RBP9.27□□□□□ -0.93
VPS39-214ENST00000614932 YY2O15391 372 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 FLRT2O43155 660 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 CYB5R3P00387 301 aaPredicted RBP9.27□□□□□ -0.93
VPS39-214ENST00000614932 PNPP00491 289 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 PCCBP05166 539 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 H1F0P07305 194 aaKnown RBP9.27□□□□□ -0.93
VPS39-214ENST00000614932 IFNGR2P38484 337 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 LPAR6P43657 344 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 SLC6A12P48065 614 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 SLC37A1P57057 533 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 FAM78AQ5JUQ0 283 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 NOXRED1Q6NXP6 359 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 CD300LDQ6UXZ3 194 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 P4HA3Q7Z4N8 544 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 MFSD9Q8NBP5 474 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 OR1J2Q8NGS2 313 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 OR5W2Q8NH69 310 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 ADAMTS17Q8TE56 1095 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 UBTD2Q8WUN7 234 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 CHST6Q9GZX3 395 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 C1orf198Q9H425 327 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 GULP1Q9UBP9 304 aa9.27□□□□□ -0.93
VPS39-214ENST00000614932 A0A0B4J2A0 478 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 C20orf202A1L168 122 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 LATO43561 262 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 NME6O75414 186 aaPredicted RBP9.26□□□□□ -0.93
VPS39-214ENST00000614932 BPNT1O95861 308 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 CISD3P0C7P0 127 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 PGAM2P15259 253 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 ST6GAL1P15907 406 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 MAOAP21397 527 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 BRS3P32247 399 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 GPR1P46091 355 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 ENPP2Q13822 863 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 COX20Q5RI15 118 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 PLEKHS1Q5SXH7 462 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 PRAMEF8Q5VWM4 474 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 PRAMEF7Q5VXH5 474 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 C1orf94Q6P1W5 598 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 KCTD9Q7L273 389 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 LRRC70Q7Z2Q7 622 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 FAM129CQ86XR2 697 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 CORO2AQ92828 525 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 NEIL2Q969S2 332 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 MUCL1Q96DR8 90 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 CLUHP3Q96NS8 147 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 LMF1Q96S06 567 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 POTEKPQ9BYX7 375 aa9.26□□□□□ -0.93
VPS39-214ENST00000614932 PCED1AQ9H1Q7 454 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms