RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 IRGMA1A4Y4 181 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 CLEC18AA5D8T8 446 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 EFCAB10A6NFE3 127 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 OR5H1A6NKK0 313 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 J3QRE1 110 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 XPNPEP2O43895 674 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 FAM20BO75063 409 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 AGFG2O95081 481 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 MRPL3P09001 348 aaKnown RBP12.55□□□□□ -0.4
UPF1-211ENST00000600868 PIPP12273 146 aaPredicted RBP12.55□□□□□ -0.4
UPF1-211ENST00000600868 HOXC12P31275 282 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 ATP6V1E1P36543 226 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 NAA10P41227 235 aaPredicted RBP12.55□□□□□ -0.4
UPF1-211ENST00000600868 SRSF1Q07955 248 aaKnown RBP eCLIP12.55□□□□□ -0.44e-11■■□□□ 13.4
UPF1-211ENST00000600868 AQP6Q13520 282 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 SLC36A2Q495M3 483 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 TIMM23BQ5SRD1 257 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 OTPQ5XKR4 325 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 CLEC18BQ6UXF7 455 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 SLC16A14Q7RTX9 510 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 DPY19L4Q7Z388 723 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.55□□□□□ -0.4
UPF1-211ENST00000600868 ZNF786Q8N393 782 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 WDR31Q8NA23 367 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 CLEC18CQ8NCF0 446 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 NANOS1Q8WY41 292 aaKnown RBP12.55□□□□□ -0.4
UPF1-211ENST00000600868 GGHQ92820 318 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 S100PBPQ96BU1 408 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 FBXO17Q96EF6 278 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 MNTQ99583 582 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 CDADC1Q9BWV3 514 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 YTHDF1Q9BYJ9 559 aaKnown RBP12.55□□□□□ -0.4
UPF1-211ENST00000600868 ACTR6Q9GZN1 396 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 FKBP14Q9NWM8 211 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 SCN3BQ9NY72 215 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 B3GNT2Q9NY97 397 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 PSORS1C1Q9UIG5 152 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 POLR1DQ9Y2S0 133 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 TPRKBQ9Y3C4 175 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 PCDHGB1Q9Y5G3 927 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 LHFPL6Q9Y693 200 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 MYO18BQ8IUG5 2567 aa12.55□□□□□ -0.4
UPF1-211ENST00000600868 UBL3O95164 117 aa12.54□□□□□ -0.4
UPF1-211ENST00000600868 FADS2O95864 444 aaKnown RBP12.54□□□□□ -0.4
UPF1-211ENST00000600868 MMP7P09237 267 aaPredicted RBP12.54□□□□□ -0.4
UPF1-211ENST00000600868 SPARCP09486 303 aa12.54□□□□□ -0.4
UPF1-211ENST00000600868 OR2T7P0C7T2 308 aa12.54□□□□□ -0.4
UPF1-211ENST00000600868 PPP3CBP16298 524 aa12.54□□□□□ -0.4
UPF1-211ENST00000600868 PAX7P23759 505 aa12.54□□□□□ -0.4
UPF1-211ENST00000600868 CRHBPP24387 322 aa12.54□□□□□ -0.4
UPF1-211ENST00000600868 ARR3P36575 388 aa12.54□□□□□ -0.4
UPF1-211ENST00000600868 UBE2NP61088 152 aaKnown RBP12.54□□□□□ -0.4
UPF1-211ENST00000600868 HIST1H3AP68431 136 aa12.54□□□□□ -0.4
UPF1-211ENST00000600868 SORDQ00796 357 aa12.54□□□□□ -0.4
UPF1-211ENST00000600868 HIST2H3PS2Q5TEC6 136 aa12.54□□□□□ -0.4
UPF1-211ENST00000600868 SLC18B1Q6NT16 456 aa12.54□□□□□ -0.4
UPF1-211ENST00000600868 HIST2H3AQ71DI3 136 aa12.54□□□□□ -0.4
UPF1-211ENST00000600868 SSX8Q7RTT4 187 aa12.54□□□□□ -0.4
UPF1-211ENST00000600868 CDC20BQ86Y33 519 aa12.54□□□□□ -0.4
UPF1-211ENST00000600868 SLC35F2Q8IXU6 374 aa12.54□□□□□ -0.4
UPF1-211ENST00000600868 ZNF454Q8N9F8 522 aa12.54□□□□□ -0.4
UPF1-211ENST00000600868 GJC3Q8NFK1 279 aa12.54□□□□□ -0.4
UPF1-211ENST00000600868 OR4F15Q8NGB8 312 aa12.54□□□□□ -0.4
UPF1-211ENST00000600868 OR52I1Q8NGK6 324 aa12.54□□□□□ -0.4
UPF1-211ENST00000600868 OR6N2Q8NGY6 317 aa12.54□□□□□ -0.4
UPF1-211ENST00000600868 OR2AJ1Q8NGZ0 328 aa12.54□□□□□ -0.4
UPF1-211ENST00000600868 OR2T27Q8NH04 317 aa12.54□□□□□ -0.4
UPF1-211ENST00000600868 OTOSQ8NHW6 89 aa12.54□□□□□ -0.4
UPF1-211ENST00000600868 FGF20Q9NP95 211 aaPredicted RBP12.54□□□□□ -0.4
UPF1-211ENST00000600868 CCNB1IP1Q9NPC3 277 aa12.54□□□□□ -0.4
UPF1-211ENST00000600868 ASH2LQ9UBL3 628 aa12.54□□□□□ -0.4
UPF1-211ENST00000600868 BLOC1S6Q9UL45 172 aa12.54□□□□□ -0.4
UPF1-211ENST00000600868 AMDHD2Q9Y303 409 aa12.54□□□□□ -0.4
UPF1-211ENST00000600868 TIMM10BQ9Y5J6 103 aa12.54□□□□□ -0.4
UPF1-211ENST00000600868 TMEM14AQ9Y6G1 99 aa12.54□□□□□ -0.4
UPF1-211ENST00000600868 FLNCQ14315 2725 aa12.53□□□□□ -0.4
UPF1-211ENST00000600868 APOL3O95236 402 aa12.53□□□□□ -0.4
UPF1-211ENST00000600868 WNT11O96014 354 aa12.53□□□□□ -0.4
UPF1-211ENST00000600868 HLA-HP01893 362 aa12.53□□□□□ -0.4
UPF1-211ENST00000600868 PSKH1P11801 424 aa12.53□□□□□ -0.4
UPF1-211ENST00000600868 CD79AP11912 226 aa12.53□□□□□ -0.4
UPF1-211ENST00000600868 ZNF32P17041 273 aa12.53□□□□□ -0.4
UPF1-211ENST00000600868 ALOX5APP20292 161 aa12.53□□□□□ -0.4
UPF1-211ENST00000600868 DCKP27707 260 aa12.53□□□□□ -0.4
UPF1-211ENST00000600868 RPS27P42677 84 aaKnown RBP12.53□□□□□ -0.4
UPF1-211ENST00000600868 CAPZA2P47755 286 aa12.53□□□□□ -0.4
UPF1-211ENST00000600868 SCRN3Q0VDG4 424 aa12.53□□□□□ -0.4
UPF1-211ENST00000600868 TMEM53Q6P2H8 277 aa12.53□□□□□ -0.4
UPF1-211ENST00000600868 ZNF540Q8NDQ6 660 aa12.53□□□□□ -0.4
UPF1-211ENST00000600868 FGFBP3Q8TAT2 258 aa12.53□□□□□ -0.4
UPF1-211ENST00000600868 SSC4DQ8WTU2 575 aa12.53□□□□□ -0.4
UPF1-211ENST00000600868 IPCEF1Q8WWN9 437 aaPredicted RBP12.53□□□□□ -0.4
UPF1-211ENST00000600868 HSD17B8Q92506 261 aa12.53□□□□□ -0.4
UPF1-211ENST00000600868 JAM3Q9BX67 310 aa12.53□□□□□ -0.4
UPF1-211ENST00000600868 C1orf198Q9H425 327 aa12.53□□□□□ -0.4
UPF1-211ENST00000600868 DUSP21Q9H596 190 aa12.53□□□□□ -0.4
UPF1-211ENST00000600868 MOV10Q9HCE1 1003 aaKnown RBP12.53□□□□□ -0.4
UPF1-211ENST00000600868 LAMP5Q9UJQ1 280 aa12.53□□□□□ -0.4
UPF1-211ENST00000600868 GDF2Q9UK05 429 aaPredicted RBP12.53□□□□□ -0.4
UPF1-211ENST00000600868 SLC25A15Q9Y619 301 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms