RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 ADAM5Q6NVV9 412 aa16.8■□□□□ 0.28
UPF1-209ENST00000600310 ZNF584Q8IVC4 421 aa16.8■□□□□ 0.28
UPF1-209ENST00000600310 CPOQ8IVL8 374 aa16.8■□□□□ 0.28
UPF1-209ENST00000600310 PIAS4Q8N2W9 510 aaPredicted RBP16.8■□□□□ 0.28
UPF1-209ENST00000600310 OR51L1Q8NGJ5 315 aa16.8■□□□□ 0.28
UPF1-209ENST00000600310 OTULINQ96BN8 352 aa16.8■□□□□ 0.28
UPF1-209ENST00000600310 MS4A3Q96HJ5 214 aa16.8■□□□□ 0.28
UPF1-209ENST00000600310 GRIP2Q9C0E4 1043 aa16.8■□□□□ 0.28
UPF1-209ENST00000600310 PLEKHF2Q9H8W4 249 aa16.8■□□□□ 0.28
UPF1-209ENST00000600310 RNPEPL1Q9HAU8 725 aa16.8■□□□□ 0.28
UPF1-209ENST00000600310 MRPL22Q9NWU5 206 aaKnown RBP16.8■□□□□ 0.28
UPF1-209ENST00000600310 MOKQ9UQ07 419 aa16.8■□□□□ 0.28
UPF1-209ENST00000600310 ITPR2Q14571 2701 aa16.79■□□□□ 0.28
UPF1-209ENST00000600310 SHISA9B4DS77 424 aa16.79■□□□□ 0.28
UPF1-209ENST00000600310 HLA-DQA2P01906 255 aa16.79■□□□□ 0.28
UPF1-209ENST00000600310 CRYAAP02489 173 aa16.79■□□□□ 0.28
UPF1-209ENST00000600310 PLP2Q04941 152 aa16.79■□□□□ 0.28
UPF1-209ENST00000600310 SPOCK1Q08629 439 aa16.79■□□□□ 0.28
UPF1-209ENST00000600310 SCRN3Q0VDG4 424 aa16.79■□□□□ 0.28
UPF1-209ENST00000600310 AQP6Q13520 282 aa16.79■□□□□ 0.28
UPF1-209ENST00000600310 MEP1BQ16820 701 aa16.79■□□□□ 0.28
UPF1-209ENST00000600310 LRRC36Q1X8D7 754 aa16.79■□□□□ 0.28
UPF1-209ENST00000600310 PABPC1L2AQ5JQF8 200 aa16.79■□□□□ 0.28
UPF1-209ENST00000600310 CXXC5Q7LFL8 322 aaKnown RBP16.79■□□□□ 0.28
UPF1-209ENST00000600310 PACRGLQ8N7B6 248 aa16.79■□□□□ 0.28
UPF1-209ENST00000600310 KBTBD8Q8NFY9 601 aa16.79■□□□□ 0.28
UPF1-209ENST00000600310 HRASLS5Q96KN8 279 aa16.79■□□□□ 0.28
UPF1-209ENST00000600310 MBOAT4Q96T53 435 aa16.79■□□□□ 0.28
UPF1-209ENST00000600310 OR2H1Q9GZK4 316 aa16.79■□□□□ 0.28
UPF1-209ENST00000600310 OR51V1Q9H2C8 321 aa16.79■□□□□ 0.28
UPF1-209ENST00000600310 TOR3AQ9H497 397 aa16.79■□□□□ 0.28
UPF1-209ENST00000600310 NKX1-2Q9UD57 310 aaPredicted RBP16.79■□□□□ 0.28
UPF1-209ENST00000600310 KCNG2Q9UJ96 466 aa16.79■□□□□ 0.28
UPF1-209ENST00000600310 CENPEQ02224 2701 aa16.79■□□□□ 0.28
UPF1-209ENST00000600310 RRP9O43818 475 aaKnown RBP16.78■□□□□ 0.28
UPF1-209ENST00000600310 GLCEO94923 617 aa16.78■□□□□ 0.28
UPF1-209ENST00000600310 SNAP29O95721 258 aa16.78■□□□□ 0.28
UPF1-209ENST00000600310 PTHP01270 115 aa16.78■□□□□ 0.28
UPF1-209ENST00000600310 FMO3P31513 532 aa16.78■□□□□ 0.28
UPF1-209ENST00000600310 GGT2P36268 569 aa16.78■□□□□ 0.28
UPF1-209ENST00000600310 SLC34A1Q06495 639 aa16.78■□□□□ 0.28
UPF1-209ENST00000600310 OGFRL1Q5TC84 451 aaPredicted RBP16.78■□□□□ 0.28
UPF1-209ENST00000600310 SLC22A25Q6T423 547 aa16.78■□□□□ 0.28
UPF1-209ENST00000600310 ZSCAN2Q7Z7L9 614 aaPredicted RBP16.78■□□□□ 0.28
UPF1-209ENST00000600310 DEPDC4Q8N2C3 294 aa16.78■□□□□ 0.28
UPF1-209ENST00000600310 TCEANCQ8N8B7 351 aa16.78■□□□□ 0.28
UPF1-209ENST00000600310 ZNF511Q8NB15 262 aa16.78■□□□□ 0.28
UPF1-209ENST00000600310 CPEB3Q8NE35 698 aaKnown RBP16.78■□□□□ 0.28
UPF1-209ENST00000600310 OR10H5Q8NGA6 315 aa16.78■□□□□ 0.28
UPF1-209ENST00000600310 LILRB1Q8NHL6 650 aaPredicted RBP16.78■□□□□ 0.28
UPF1-209ENST00000600310 RDH12Q96NR8 316 aa16.78■□□□□ 0.28
UPF1-209ENST00000600310 KCNS3Q9BQ31 491 aa16.78■□□□□ 0.28
UPF1-209ENST00000600310 WNT5BQ9H1J7 359 aa16.78■□□□□ 0.28
UPF1-209ENST00000600310 C1orf198Q9H425 327 aa16.78■□□□□ 0.28
UPF1-209ENST00000600310 ASH2LQ9UBL3 628 aa16.78■□□□□ 0.28
UPF1-209ENST00000600310 POLR1DQ9Y2S0 133 aa16.78■□□□□ 0.28
UPF1-209ENST00000600310 ABCA4P78363 2273 aa16.78■□□□□ 0.28
UPF1-209ENST00000600310 CRYBG3Q68DQ2 2970 aa16.78■□□□□ 0.28
UPF1-209ENST00000600310 CELSR2Q9HCU4 2923 aa16.78■□□□□ 0.28
UPF1-209ENST00000600310 CACNA1DQ01668 2161 aa16.77■□□□□ 0.28
UPF1-209ENST00000600310 IGHV2OR16-5A0A0B4J2B6 119 aa16.77■□□□□ 0.28
UPF1-209ENST00000600310 IQCMA0A1B0GVH7 501 aa16.77■□□□□ 0.28
UPF1-209ENST00000600310 TVP23AA6NH52 213 aa16.77■□□□□ 0.28
UPF1-209ENST00000600310 PRODHO43272 600 aa16.77■□□□□ 0.28
UPF1-209ENST00000600310 TLX2O43763 284 aaPredicted RBP16.77■□□□□ 0.28
UPF1-209ENST00000600310 ZNF823P16415 610 aa16.77■□□□□ 0.28
UPF1-209ENST00000600310 SLC2A5P22732 501 aa16.77■□□□□ 0.28
UPF1-209ENST00000600310 CALCRP30988 508 aa16.77■□□□□ 0.28
UPF1-209ENST00000600310 SLC35D3Q5M8T2 416 aa16.77■□□□□ 0.28
UPF1-209ENST00000600310 LYPD4Q6UWN0 246 aa16.77■□□□□ 0.28
UPF1-209ENST00000600310 ALDH16A1Q8IZ83 802 aa16.77■□□□□ 0.28
UPF1-209ENST00000600310 GALNT4Q8N4A0 578 aa16.77■□□□□ 0.28
UPF1-209ENST00000600310 OR6K6Q8NGW6 343 aa16.77■□□□□ 0.28
UPF1-209ENST00000600310 AKR7LQ8NHP1 331 aa16.77■□□□□ 0.28
UPF1-209ENST00000600310 TMEM163Q8TC26 289 aa16.77■□□□□ 0.28
UPF1-209ENST00000600310 AKAP1Q92667 903 aaKnown RBP eCLIP16.77■□□□□ 0.28
UPF1-209ENST00000600310 SMPD3Q9NY59 655 aaPredicted RBP16.77■□□□□ 0.28
UPF1-209ENST00000600310 LHFPL6Q9Y693 200 aa16.77■□□□□ 0.28
UPF1-209ENST00000600310 COMMD3-BMI1R4GMX3 469 aa16.77■□□□□ 0.28
UPF1-209ENST00000600310 MYO9AB2RTY4 2548 aa16.77■□□□□ 0.28
UPF1-209ENST00000600310 ATP6V1G2-DDX39BF2Z307 99 aa16.76■□□□□ 0.27
UPF1-209ENST00000600310 M0R129 80 aa16.76■□□□□ 0.27
UPF1-209ENST00000600310 DLGAP1O14490 977 aa16.76■□□□□ 0.27
UPF1-209ENST00000600310 ZNF35P13682 527 aa16.76■□□□□ 0.27
UPF1-209ENST00000600310 HIST1H3AP68431 136 aa16.76■□□□□ 0.27
UPF1-209ENST00000600310 ADAM8P78325 824 aa16.76■□□□□ 0.27
UPF1-209ENST00000600310 ZNF672Q499Z4 452 aaPredicted RBP16.76■□□□□ 0.27
UPF1-209ENST00000600310 KLHL12Q53G59 568 aa16.76■□□□□ 0.27
UPF1-209ENST00000600310 HIST2H3PS2Q5TEC6 136 aa16.76■□□□□ 0.27
UPF1-209ENST00000600310 HIST2H3AQ71DI3 136 aa16.76■□□□□ 0.27
UPF1-209ENST00000600310 SLC30A7Q8NEW0 376 aa16.76■□□□□ 0.27
UPF1-209ENST00000600310 BBS1Q8NFJ9 593 aa16.76■□□□□ 0.27
UPF1-209ENST00000600310 OR8J1Q8NGP2 316 aa16.76■□□□□ 0.27
UPF1-209ENST00000600310 NEUROG1Q92886 237 aa16.76■□□□□ 0.27
UPF1-209ENST00000600310 IL4I1Q96RQ9 567 aa16.76■□□□□ 0.27
UPF1-209ENST00000600310 PITX2Q99697 317 aa16.76■□□□□ 0.27
UPF1-209ENST00000600310 CDADC1Q9BWV3 514 aa16.76■□□□□ 0.27
UPF1-209ENST00000600310 MARCH7Q9H992 704 aa16.76■□□□□ 0.27
UPF1-209ENST00000600310 CYB5R1Q9UHQ9 305 aa16.76■□□□□ 0.27
UPF1-209ENST00000600310 NDRG4Q9ULP0 352 aaKnown RBP16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms