RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	MTNR1A	P48039	350 aa		11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	RASGEF1B	Q0VAM2	473 aa		11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	LCN1P1	Q5VSP4	162 aa		11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	LYPD4	Q6UWN0	246 aa		11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	STX19	Q8N4C7	294 aa		11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	ZIC4	Q8N9L1	334 aa		11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	OR4F15	Q8NGB8	312 aa		11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	OR51G2	Q8NGK0	314 aa		11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	OR52I1	Q8NGK6	324 aa		11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	OR6K6	Q8NGW6	343 aa		11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	OR6K3	Q8NGY3	331 aa		11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	TMEM171	Q8WVE6	324 aa		11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	IPCEF1	Q8WWN9	437 aa	Predicted RBP	11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	ZMYND19	Q96E35	227 aa	Predicted RBP	11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	FOXN4	Q96NZ1	517 aa		11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	SNX18	Q96RF0	628 aa		11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	SF3B5	Q9BWJ5	86 aa	Known RBP	11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	NUAK2	Q9H093	628 aa		11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	TAS2R16	Q9NYV7	291 aa		11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	CNOT2	Q9NZN8	540 aa	Known RBP	11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	SCOC	Q9UIL1	159 aa		11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	ING1	Q9UK53	422 aa	Predicted RBP	11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	CLEC4A	Q9UMR7	237 aa		11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	FLVCR1	Q9Y5Y0	555 aa		11.13	□□□□□ -0.63
UPF1-208	ENST00000600012	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	SLC22A31	A6NKX4	558 aa		11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	11.12	□□□□□ -0.63
UPF1-208	ENST00000600012		M0R3G1	203 aa		11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	SLC16A7	O60669	478 aa		11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	CNOT4	O95628	575 aa	Known RBP	11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	FADS2	O95864	444 aa	Known RBP	11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	GPANK1	O95872	356 aa		11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	IGHG1	P01857	330 aa		11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	PGA4	P0DJD7	388 aa		11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	PGA3	P0DJD8	388 aa		11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	PIP	P12273	146 aa	Predicted RBP	11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	PAX1	P15863	534 aa		11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	CTLA4	P16410	223 aa		11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	C21orf33	P30042	268 aa	Predicted RBP	11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	MAP2K4	P45985	399 aa		11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	NR1H2	P55055	460 aa		11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	CLRN1	P58418	232 aa		11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	LGALS3BP	Q08380	585 aa		11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	ST3GAL4	Q11206	333 aa		11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	ZNF704	Q6ZNC4	412 aa	Predicted RBP	11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	C22orf34	Q6ZV56	151 aa		11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	ZC3HAV1	Q7Z2W4	902 aa	Known RBP	11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	OR6V1	Q8N148	313 aa		11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	PROKR2	Q8NFJ6	384 aa		11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	OR2T4	Q8NH00	348 aa		11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	OR6X1	Q8NH79	312 aa		11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	IGFBPL1	Q8WX77	278 aa		11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	MYDGF	Q969H8	173 aa		11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	SLC25A44	Q96H78	314 aa	Predicted RBP	11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	GMPPA	Q96IJ6	420 aa	Predicted RBP	11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	OR2M2	Q96R28	347 aa		11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	SIGLEC11	Q96RL6	698 aa		11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	TEAD3	Q99594	435 aa		11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	CXorf56	Q9H5V9	222 aa		11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	CCNB1IP1	Q9NPC3	277 aa		11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	PLSCR4	Q9NRQ2	329 aa		11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	WARS2	Q9UGM6	360 aa	Known RBP	11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	SNX5	Q9Y5X3	404 aa		11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	COMMD3-BMI1	R4GMX3	469 aa		11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	ZAN	Q9Y493	2812 aa		11.12	□□□□□ -0.63
UPF1-208	ENST00000600012	CHD3	Q12873	2000 aa	Known RBP	11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	IGLV1-36	A0A0B4J1U3	117 aa		11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	IGKV1D-43	A0A0B4J1Z2	117 aa		11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	TVP23A	A6NH52	213 aa		11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	TRIM64C	A6NLI5	447 aa		11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	INAFM1	C9JVW0	142 aa		11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	AKAP8	O43823	692 aa	Known RBP	11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	SS18L1	O75177	396 aa	Predicted RBP	11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	GLCE	O94923	617 aa		11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	RAB36	O95755	333 aa		11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	THBD	P07204	575 aa		11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	NTF4	P34130	210 aa		11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	NAA10	P41227	235 aa	Predicted RBP	11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	CENPA	P49450	140 aa		11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	SELENOP	P49908	381 aa		11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	ETFDH	Q16134	617 aa		11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	KLHL22	Q53GT1	634 aa		11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	SLC35D3	Q5M8T2	416 aa		11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	PHYHD1	Q5SRE7	291 aa		11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	LINC01590	Q5TEZ4	76 aa		11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	OTP	Q5XKR4	325 aa		11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	HDDC2	Q7Z4H3	204 aa		11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	SPART	Q8N0X7	666 aa		11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	TMEM123	Q8N131	208 aa		11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	SMAP2	Q8WU79	429 aa	Predicted RBP	11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	TMEM80	Q96HE8	168 aa		11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	ADAD1	Q96M93	576 aa	Known RBP	11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	MDFI	Q99750	246 aa		11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	ALG12	Q9BV10	488 aa		11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	MRPL13	Q9BYD1	178 aa	Known RBP	11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	ADGRL4	Q9HBW9	690 aa		11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	ZNF701	Q9NV72	531 aa	Predicted RBP	11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	MRPS18A	Q9NVS2	196 aa	Known RBP	11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	KLHL9	Q9P2J3	617 aa		11.11	□□□□□ -0.63
UPF1-208	ENST00000600012	B9D1	Q9UPM9	204 aa		11.11	□□□□□ -0.63

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