RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 LRMDAQ9H2I8 198 aa7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 C1orf198Q9H425 327 aa7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 NANOGQ9H9S0 305 aa7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 NTN4Q9HB63 628 aa7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 PLEK2Q9NYT0 353 aa7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 INSIG2Q9Y5U4 225 aa7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 NPTNQ9Y639 398 aa7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 COL7A1Q02388 2944 aa7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 A0A1W2PPL8 197 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 A0A1W2PRG6 482 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 EVPLLA8MZ36 301 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 FOXH1O75593 365 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 OR7A10O76100 309 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 PTHP01270 115 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 IGHMP01871 453 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 MT-ND5P03915 603 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 SELEP16581 610 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 ZNF12P17014 697 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 CD80P33681 288 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 OR1E2P47887 323 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 SLC6A9P48067 706 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 DBPQ10586 325 aaPredicted RBP7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 PIN1Q13526 163 aaPredicted RBP7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 TAF11Q15544 211 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 C10orf128Q5T292 105 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 ARMC4Q5T2S8 1044 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 C1orf94Q6P1W5 598 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 SLC25A47Q6Q0C1 308 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 BRD3OSQ6XYD6 125 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 DHDDSQ86SQ9 333 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 OR5AS1Q8N127 324 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 TEX29Q8N6K0 151 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 KIR3DL3Q8N743 410 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 C11orf65Q8NCR3 313 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 C19orf18Q8NEA5 215 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 ITLN1Q8WWA0 313 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 SLC7A6Q92536 515 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 POP5Q969H6 163 aaKnown RBP7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 SIGLEC11Q96RL6 698 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 SEPHS2Q99611 448 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 EGLN1Q9GZT9 426 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 MS4A7Q9GZW8 240 aaPredicted RBP7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 SIAEQ9HAT2 523 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 PATZ1Q9HBE1 687 aaKnown RBP7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 EMC7Q9NPA0 242 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 INIPQ9NRY2 104 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 TMEM106BQ9NUM4 274 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 NKIRAS1Q9NYS0 192 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 PDP1Q9P0J1 537 aaPredicted RBP7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 EIF3KQ9UBQ5 218 aaKnown RBP7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 KLHL21Q9UJP4 597 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 SH3GLB1Q9Y371 365 aa7.26□□□□□ -1.25
SHKBP1-220ENST00000599716 HERC2O95714 4834 aa7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 TRAV40A0A0B4J280 105 aa7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 CEACAM18A8MTB9 384 aa7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 IMPA2O14732 288 aa7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 HOXA3O43365 443 aaPredicted RBP7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 CYB5R3P00387 301 aaPredicted RBP7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 MT-ND1P03886 318 aa7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 RNASE1P07998 156 aaKnown RBP7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 VSIG8P0DPA2 414 aa7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 PPIBP23284 216 aaKnown RBP7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 GATA3P23771 443 aa7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 KRTAP10-3P60369 221 aa7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 MRPS34P82930 218 aaKnown RBP7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 ENDOGQ14249 297 aaKnown RBP7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 MOGQ16653 247 aa7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 MMEL1Q495T6 779 aa7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 MTX3Q5HYI7 312 aa7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 MBNL2Q5VZF2 373 aaKnown RBP7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 RUSC1-AS1Q66K80 236 aa7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 TREML1Q86YW5 311 aa7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 C1QL4Q86Z23 238 aa7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 PARP8Q8N3A8 854 aa7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 OR10AD1Q8NGE0 317 aa7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 OR52E2Q8NGJ4 325 aa7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 OR10A6Q8NH74 314 aa7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 TMIGD2Q96BF3 282 aa7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 SGTBQ96EQ0 304 aa7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 C4orf45Q96LM5 186 aa7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 MRI1Q9BV20 369 aa7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 KCNN2Q9H2S1 579 aa7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 MARCH7Q9H992 704 aa7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 STARD10Q9Y365 291 aa7.25□□□□□ -1.25
SHKBP1-220ENST00000599716 DOCK11Q5JSL3 2073 aa7.24□□□□□ -1.25
SHKBP1-220ENST00000599716 DNAH1Q9P2D7 4330 aa7.24□□□□□ -1.25
SHKBP1-220ENST00000599716 TRAV27A0A087WT01 109 aa7.24□□□□□ -1.25
SHKBP1-220ENST00000599716 FAM181BA6NEQ2 426 aa7.24□□□□□ -1.25
SHKBP1-220ENST00000599716 F5H0A9 414 aaPredicted RBP7.24□□□□□ -1.25
SHKBP1-220ENST00000599716 H0YL77 283 aa7.24□□□□□ -1.25
SHKBP1-220ENST00000599716 ENTPD5O75356 428 aa7.24□□□□□ -1.25
SHKBP1-220ENST00000599716 ERLIN1O75477 346 aa7.24□□□□□ -1.25
SHKBP1-220ENST00000599716 ABHD16AO95870 558 aa7.24□□□□□ -1.25
SHKBP1-220ENST00000599716 CD55P08174 381 aa7.24□□□□□ -1.25
SHKBP1-220ENST00000599716 YAP1P46937 504 aaKnown RBP7.24□□□□□ -1.25
SHKBP1-220ENST00000599716 MRPL19P49406 292 aaKnown RBP7.24□□□□□ -1.25
SHKBP1-220ENST00000599716 DAP3P51398 398 aaKnown RBP7.24□□□□□ -1.25
SHKBP1-220ENST00000599716 MMP16P51512 607 aa7.24□□□□□ -1.25
SHKBP1-220ENST00000599716 ZNF133P52736 654 aaPredicted RBP7.24□□□□□ -1.25
SHKBP1-220ENST00000599716 SLC18A1P54219 525 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms